| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4390 |
|---|
| Symbol | |
|---|
| ID | 6118745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5316845 |
|---|
| End bp | 5319376 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641635952 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001762737 |
|---|
| Protein GI | 170728711 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTGA TAAAAACCGC TCTTGTTCTC CCTATTACCC TTATCGTCCT CGCTCTACTC
GGGGGCTGTA ATGGCTCCTC CGATGATAGT AGTGGCGGCG GTGGTGAAGA AAACAGTGGA
GAGTATGCGC TATCACTAAG TTATAAAACT GTAGTCGATG GTCAATGTGC TGAAGCAACT
AATGACTTAA GTTTTTCAAG CAACGCTAGT ATCTGCGTGG TTGCCAACTT AACTCAAGGT
GGCAAGGCTA GCAGTGGCGG TTTAGTCAGT TTCAGCGCCA GCTTAGGCAC CCTTGCTCCA
GCCACTAAAC TGACCAACTC GAGTGGCTTA GCTGAAGTTA TTCTAACCCC GGAAGCTGGA
ACCCAAGGTG CAGGTACTGT TACAGCTCAG TTCGATACAA AAGCGGCTGA AAATAACATT
CTCACCATTG AGCGAAACTA TGAGTTCACG TCAACAGCTG CTCCCTCAGA GCCTAAGTTC
ACTTTAAATA GCGCAATAAT CAATGGGACG ACTGTTGTCA CTCAGTTTAA AGCTGACGAA
ACAGTACAAC TACAAGCACA ATTCTTAAAT GAGCAGGGCC AAGGAGTTGC AGGCAAAAAA
GCGACTTTTA CGGCTGGTAA CGCTAATTTA AATCCAAACT CTGCATTAAC TAAAGAAAAT
GGTATTGCCC AAGTCAGTTA TACACCAACA GAAAGTGAGC TCGGTGCAGC CAATTTTTCT
GTAACTCTGG ATGATGAAGG TAAAACTTAC CAAAGCTCAG GCCTCTATGA AGTACTTGCA
AAGGATGCTG TAAGCGATGA CGGTATTATC GTCATTGGTT ATTTCTCAGA AGATGGAAAT
ACCTTTACAG AAAATGAATT AGCAACAACA TTGCCCCTAG TAGCTGGTAG CCGAACTGTA
AGCGCGGGTG GTACATTTGG TGTCACAGCT GATTTAGCGA CGAAAAATAA CGATGGCAGC
TATACACGCC TACAAACGCC AACCAGCGTC AGTTTCAGTT CAAGTTGTAT ACTGAGCAAC
AGTGCAAGTA TCGACTCACC AGTCACTACG CTTTCAGGTA TAGCCAGATC TACTTTCCAA
AATACTAATT GTAGTGGTAA TAGTTCACGT GATGACCAGA TCATCGCATC AGTAGTTGCA
GGAAATCAAA CTATCTCTGC AACACTTGAT TTCGTCCTCG CCAGACAAAC TCTAGCTAAT
ATGAGCTTTA TTTCTGCTGA GCCAACATCG ATTCGAATTA AGGGCGCAGG TGGTACAGGA
ACAAGTGAAT CTTCATTGAT CACATTTAAA GTATCTGATG CTAACGGCCA AGCAATTGCA
CAACAAACTG TTGATTTTAC ACTCGATACA ACCATTGGTG GAATCAGCTT TGCAGATGGT
GGTAATAGCA CAAGTAACAC CAGCAACTCC TTTGGTCTAG TCAGCGCAAC CGTACTATCA
GGAACAGTCC CTACGCCTGT ACGTGTATTA GCAACAGCCA CTGCGAATAA TGAATCAGTC
TCTAGCCAGT CAGAGCAGCT TACGGTAAAT ACAGGCTTAC CTCAGCAGCT AGGGTTTAGC
CTATCAACGT CTGTAGCTAA CCCTGAAGCT GGAGACTTTA ATGGTGAAAC CGCTTTAATT
ACCGCATATG CCTCCGATAG TTTCGGTAAC CCAGCTCCCG ATGACACTAC CATTAACTTT
ACTACTGAAG GTGGTCAGAT AGAACCTAAG TGTCTGACAC AAAATGGTAC ATGTTCCGTC
ACTTGGACAT CGGCTAGCCC ACGTGTTCCA GATCATCGCA TCACAGTACT TGCCTATGCC
CTAGGTCATG AGACTTTCTT CGATACAAAC GGTAATAATG TGTTTGATAC GAATGATTAT
GAAACAGTTA AAGATAGCGA GGGAAATGAT TCAATCAAAA CTTATTTGGC TTGTCTTAAT
AATCAGGGAA TGGCAAAAGC CTGTTCAGGT AACGGTATGG ATATAGAAGC TTATCTTCCT
AAAGGTTTAA GCGATTTACC TGATGCATTC CGTGACGATA ATGAAAATGG TATCTATGAG
CTAGGTGAAA AATATTTCAA TACAAATAAC ACTCCTGAAT ACATGATACC AAATGGTAAA
TTTAATGGTC CTCAATGTGA GGGAGATTAC TGTGGAGTAA GTACTTATAT TCGCAAGGCA
CTGGTAATGA CTATGTCTGG TTCAGATGCA GACTTTACTG TGTATCAAGA TAATGTACAG
GTATACAGCA CAGCTACAGG GCTAGGAAAC GTAACTTCAA TACCTGTAAA TGGTAGCTCT
AATTTCACAG TTCGATTTTA TGATAACGCG AATCAAATTA TGCCTGCTGG AAGCAATGCA
GCAATTTCAG CGACAAATGG TACCTTAGCC TTTAATGGTT ACACTGTACC AAGTGGTAAT
TCTCATGGCG GTACTCAGAC TAGTTTTGGT TTATCACATG ATGGTGAAAC TGCGCTTAGT
CAAGTATCTA TAAGCTTAAC AACACCACTT GGGACAACAA CAACACTAAC AATACCAGTA
CAACTGCTCT AG
|
|---|
| Protein sequence | MRLIKTALVL PITLIVLALL GGCNGSSDDS SGGGGEENSG EYALSLSYKT VVDGQCAEAT
NDLSFSSNAS ICVVANLTQG GKASSGGLVS FSASLGTLAP ATKLTNSSGL AEVILTPEAG
TQGAGTVTAQ FDTKAAENNI LTIERNYEFT STAAPSEPKF TLNSAIINGT TVVTQFKADE
TVQLQAQFLN EQGQGVAGKK ATFTAGNANL NPNSALTKEN GIAQVSYTPT ESELGAANFS
VTLDDEGKTY QSSGLYEVLA KDAVSDDGII VIGYFSEDGN TFTENELATT LPLVAGSRTV
SAGGTFGVTA DLATKNNDGS YTRLQTPTSV SFSSSCILSN SASIDSPVTT LSGIARSTFQ
NTNCSGNSSR DDQIIASVVA GNQTISATLD FVLARQTLAN MSFISAEPTS IRIKGAGGTG
TSESSLITFK VSDANGQAIA QQTVDFTLDT TIGGISFADG GNSTSNTSNS FGLVSATVLS
GTVPTPVRVL ATATANNESV SSQSEQLTVN TGLPQQLGFS LSTSVANPEA GDFNGETALI
TAYASDSFGN PAPDDTTINF TTEGGQIEPK CLTQNGTCSV TWTSASPRVP DHRITVLAYA
LGHETFFDTN GNNVFDTNDY ETVKDSEGND SIKTYLACLN NQGMAKACSG NGMDIEAYLP
KGLSDLPDAF RDDNENGIYE LGEKYFNTNN TPEYMIPNGK FNGPQCEGDY CGVSTYIRKA
LVMTMSGSDA DFTVYQDNVQ VYSTATGLGN VTSIPVNGSS NFTVRFYDNA NQIMPAGSNA
AISATNGTLA FNGYTVPSGN SHGGTQTSFG LSHDGETALS QVSISLTTPL GTTTTLTIPV
QLL
|
|---|
| |