| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4375 |
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| Symbol | |
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| ID | 6118730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5293692 |
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| End bp | 5296688 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635937 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001762722 |
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| Protein GI | 170728696 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000110993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTGA AGCAATTTAA GAAGAGTCGT TTGTCAGTCG CTCTAGCTGT CGTGCTGGGG
TCTGGAAGTG CTCCTTTCGC CATGGCTGAA GAGAGTAACG AGTCCGAAAA AGAGACCAAT
ATTGAAGTTA TTGAGGTTAA AGGTATTCAG GGAAGCCTCT ATCGCTCTAT GGATTTAAAG
CGAGGATCAT CGGGTGTTGT TGATGCTATC TCTGCCGAGG AGTTAGGTAA GTTTCCTGAT
ACTAACTTAG CAGAATCACT ACAGAGAATT ACTGGTGTAA CGGTGAGCCG TGCCAATGGT
GAAGGCAGCC AAATAACGGT CAGGGGTTTT GGTCCGCAAT ATAACTTGAT CACACTTAAT
GGCAGACAGA TGCCAGGTAC CGGTTATAGC CGCTCCTACA GCTTAGAAAA CCTTTCTTCT
GAGGCGGTAA AGTCCCTTGA GGTGATAAAG ACGGCCAAAG CGGATATGCC AACAGGTGGT
TTAGGCGCCA CGGTCAATAT TGTGACTCGT AAGCCTCTGA ACGATCCTGG TCAATCATTT
AGCTTCTCCG CTAAAGGTAT CTATGATGAG TCTAATGTCG AAGGTGATGA TGTGACCCCT
GAGATCTCGG GGATTTACAA TCAGACATTC TTAGATGACA GTTTAGGTTT TGTTATTAGC
GCCTCTCATC AAGAGCGAGA TTTTCAGCAG CAGGTGGCCA ACAGCCAAGG CTGGATAGCA
CAAACTGATA ATAAAACACT CGCTAAAGCT GATGGCTCAA CATTCATTGA TGGTCGAATA
AGAAATGAAG CAGGGAATAT ACTGTCTCAT TTTACTGATG AAGATGGAGT TCCCGTTGCC
CCCTCTTTTT TCCCGCGGGA TATGAACTAT AGCGTCAATG ACGTACAGCG CGAACGAACC
AATGCTATGG CCACGCTACA ATATGCACCA ACCGAAGATC TGGTGCTGAC TGCAGATTAT
GTGGTTACTC GAGCGTTGAC TGGCATTAAC GGGTTTGGTT GGGGGATCTG GAACTCCTCA
ACCAGTGGTG CACCTGTCGT TGCTTATGAA TTGGATGAGA ATGGTACCGC CCTCTACTCA
GATATTCGTG GTGGTGATGG CTCTTTTACT GCCAATCGAA GTACGACAGA GGTGAATGCA
CAGTCTGTTG GGTTAAATAT CGATTGGACG TTAAATGATG AATGGACGCT AAGTCTGGAT
TACCATGATT CCTCCAATGA GATAGATAAC GGCGCTGACA AGGGACTTGG TGGTGCTGGG
CAAGTTATTT TGGGCTCAGA TCAGCTGACC TCCAAAATCT ATGACTACCG TGGTGGTGAT
GTGCCTCATG CGACGATTAA TTGGAATAAT GGCAGTACTC AACTAGATCC AGGTGCTATC
GATTCAAACT TCAGCCAGTT TATCCACTCA CCAGGGGAGT CTGAGATCCA ACAAGCTCAG
CTCAATGCCA ACTGGTACCC AGATTTTCTC GATAACTTAA CGAAAGTTGA TTTTGGTGGC
TCTTATACCA AGCAAACACT CTCAGGCACT ACGGCTTGGA GTGGATTGAG AGGCGGGCCA
GGTTTTAACC CTTCCTACAC AGAGATCTTT CCTGACTCTA TGTTCCACTT ACAGAGTACC
GCAGGTTTGC TAGATGAGCT GGCTGGTGGT GGGGCTGGGT TGTTGCCAAG TTATTTCTAT
AGTTTTGATT TCGATGAAGC TGTGGCAAGG CAATTAGCTT TTATTAACCA AGATGTGGCT
GGGGAGAACT ATTACTCTGC TGACCCTTAC TTTGATGGTA TCGATAGCTC GAATCTGATC
GAAGAGGAGA CCTCTTCACT CTATATCACT TCAGCGTGGG AGTTTGATAT CGCTGATATT
ACGGTTGATG TCAATCTTGG CTTAAGGTAT GAGAAAACTG AAGTATCCAG TACCGTTAAG
CAGAAGGTTG AGCAGCAAGT CGTTTGGGCG AGTGCTACGG AGTGGGTAAC CCTGTATGAA
GCAGGTGGAG ATGATAACTT TTTCACTCAA ACCGGTGAAT ATGATGTCTG GCTACCTATG
GTAGATATCA GTGCAGAGGT GTATGAAGAT CTACTCGTAC GTGTATCGGC CAGCAAAACC
TTAGGTCGTC CACTACTTGG TGACATGGTT GCAGGTCGCA GTTTAAGTGG TAGCCCTAAG
GTTGGCTCTC GAACTGGTGG GATAGGTAAT CCTGGGTTGT TGCCACTTGA ATCGGTCAAT
TTCGATGTAT CATTCGAGTA TTACTACGGT GATGCCAGTT ACGCTTCTAT CGGTCTATTT
AGTAAAGATG TGAGTAACTT TGTCTCTCGT AGTACTAATC AGATCACGAT TGATGGCCTG
CATGATGTTT ATAACAGCCC AAGATACTTA GAGGCGGTAA GTCAGCTAGA AGCTGCGGGC
ACCTCTGTGA CAGAAAACAG TATCTTTGAT CAGATGATCG CCAATGGTCA TGGAAACGCA
TCAGGGCAAA TAGAGGCGTT AAGTTCAGAT CCGCTAATTG TTTGGGATGT AACATCACCA
GTCAATAGTG ATAAAAAATC AGTCGAAGGT ATTGAGCTGG CTGTACAGCA TATCTTTGGT
GAGAGTGGTT TTGGATTTGG TGCTAACGCC ACCTTTGTCA GTGGCGATGT GAAGTTTGAC
TCCTACAGTC TTGCACAGCA GCAGCCGTTG GAAGGGTTGG GAGATTCTGC GAACTTCCAG
GCATTTTATG AGAATGATGA GCTGTCGGTG AAGTTTACCT ACGCTTGGCG TGACAGTTAC
CTAATTGGTG TCGGTCAATC CCAAGGTTCG GCTGATGCGC CACCTCAGTT TGCTAAAGAG
TATGGTCAGT TGGATGCCAG TATCAACTAT GATATCAATG AAAATATCAC CATATTCCTT
GAAGGCATTA ATATCAATAA TGAGACTGAA GAGGGTTACG GCCGCTTTGA AGAGCAGTTT
CTATTTGCTA GACAATATGG TTCTCGTTAT ATGCTAGGTG GGCGTGTGAG CTTTTAA
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| Protein sequence | MLLKQFKKSR LSVALAVVLG SGSAPFAMAE ESNESEKETN IEVIEVKGIQ GSLYRSMDLK
RGSSGVVDAI SAEELGKFPD TNLAESLQRI TGVTVSRANG EGSQITVRGF GPQYNLITLN
GRQMPGTGYS RSYSLENLSS EAVKSLEVIK TAKADMPTGG LGATVNIVTR KPLNDPGQSF
SFSAKGIYDE SNVEGDDVTP EISGIYNQTF LDDSLGFVIS ASHQERDFQQ QVANSQGWIA
QTDNKTLAKA DGSTFIDGRI RNEAGNILSH FTDEDGVPVA PSFFPRDMNY SVNDVQRERT
NAMATLQYAP TEDLVLTADY VVTRALTGIN GFGWGIWNSS TSGAPVVAYE LDENGTALYS
DIRGGDGSFT ANRSTTEVNA QSVGLNIDWT LNDEWTLSLD YHDSSNEIDN GADKGLGGAG
QVILGSDQLT SKIYDYRGGD VPHATINWNN GSTQLDPGAI DSNFSQFIHS PGESEIQQAQ
LNANWYPDFL DNLTKVDFGG SYTKQTLSGT TAWSGLRGGP GFNPSYTEIF PDSMFHLQST
AGLLDELAGG GAGLLPSYFY SFDFDEAVAR QLAFINQDVA GENYYSADPY FDGIDSSNLI
EEETSSLYIT SAWEFDIADI TVDVNLGLRY EKTEVSSTVK QKVEQQVVWA SATEWVTLYE
AGGDDNFFTQ TGEYDVWLPM VDISAEVYED LLVRVSASKT LGRPLLGDMV AGRSLSGSPK
VGSRTGGIGN PGLLPLESVN FDVSFEYYYG DASYASIGLF SKDVSNFVSR STNQITIDGL
HDVYNSPRYL EAVSQLEAAG TSVTENSIFD QMIANGHGNA SGQIEALSSD PLIVWDVTSP
VNSDKKSVEG IELAVQHIFG ESGFGFGANA TFVSGDVKFD SYSLAQQQPL EGLGDSANFQ
AFYENDELSV KFTYAWRDSY LIGVGQSQGS ADAPPQFAKE YGQLDASINY DINENITIFL
EGININNETE EGYGRFEEQF LFARQYGSRY MLGGRVSF
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