| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4370 |
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| Symbol | |
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| ID | 6118725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5286304 |
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| End bp | 5288913 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641635933 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001762718 |
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| Protein GI | 170728692 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATATT CTAAACATTT TAATGAAAGC ACAATAGTCT TAGTCATTAT TGTTTTTGCT
TCTTTACTAT CAAATTTCAG TTATGCAGCA CAAAATGCTA AACCCTATAC AACCGCTTAT
CGCTATAACT TAAGTGGACA AGTCACCGGT GTCATCTCAC CCGATCCTGA TAACTCAGGC
CCTCTTAAGT ATATAGCAAC ACGTAACACG TACAACAGCA GAGGCTTACT CACAAAAGTA
GAGACAGGTG AATTAGCATA TTGGCAAAAT GAAAATGTAA AACCAAAAAA CTGGTATGGA
TTTCATCGCT TAACCGAACA AACCACGACT TATAATAACA ATGGTTTACC AGTATCTATA
GCAACTAGTG GTCGTAACTC AACCAATCAA TTTGTCACAA GTCAATTTAA ACAAACAAGC
TATGACCAAT ATAACAGGGT GGTATGTGAG GCAACACGTT TAACACCCAA CAGCTTTAAT
AACACATCTA TCAGTGCCTG TTCTGCCAAT CACTCAAGTG AATTTGGCTA TGACCGTATT
ACCAAATATG AGTATGATAA CATTGGTCAA ATACTCAGAG TTTATAAAGC TTATGGCACA
CCGTTGCAAC AAATTTACAG AGCTAATGAA TATGATAATG AAAAAATTGG ACAATTAAAA
AGTATAACTG ATGCAAATAA TAATAAAACA AGACTAACAT ATGACTCAAG AGGTCGTCTT
GAATATCGTT ATTATCCTGA TAACTCATAC AATCATTACG CTTACAATGT AAATAATGAC
CTAATTCAAG AAACCAAACG TAACGGTAAA ATATTCAAAT ACTATTACGA TAACAATCAT
AGATTAACAT CCAAAAAGCC TCCTTCTGGA TTATCAACAT CTTATACTTA TGACTTAAGA
GGATTAACGC TATCAAGTAA GTTCTCTCAT CCTTATTACG GCCAGTATTC ACGAGGAGTC
ACTAACACTT ATGATGGCGC AGGTAATCTA ACCTCAACAA CTATCGCAAT GGGAGGGAAT
GATAATAGTC CTCCCACCTT TGTGAAAACA TTGCGTTTCG GATATGACAA AAATAATAAC
CGCAGCTATA TTAATCACTC TGATTATAAA TCATTTTACT ATCAATTCGA TGGTCTTGAT
AGGATATCAA ACATACTTTT CCCATCATAC TCAAACCTAA TACGCTTTGC CTATGACAGA
TCAGGAGGCC GCTCAATTAT CACCCGAGCC AGTGCCACTG GAGCGTCCAC AAGTTATGGC
TACGATAATA TCAATCGTCT AAAGAGTTTT AACCAGAATT TTCCTTCAAC TGATAAAGAT
TTAACGAATA CCTTCACCTA TAACCCTGTA AATCAGATCA CCAGTATTAA CAGAAGCAAT
TCTATTTATC AGTATATAGG TAATGAGAAC TTAGTCGGCA GCTACCAAGT CAACAACTTG
AATCAATACA CAAATATTAA CGGTAAAACA TTAACCTACG ATAACAATGG TAATTTAAAG
TCAGACGGAA CAAATTACTA TTCATATGAT GATGAAAATA GACTGTTGAC AGTAACTGGC
AATACTAATG CCACCTTTGT TTACGACCCA TTAGGGCGTT TACATGAAAC GACAATCAAT
GGTGTGAACA CAAAGTTTGA GTTCGATGGT GACGCACTCA TCGCAGAGTA CAATAGCAGT
GGCAATATAA TTAATCGATA CGTTCACGGA GACAAGGTCG ATGAACCATT GCTACAATTT
AATGGAAATA GCGTTGTTAG TACCAATAAT ATTCGTTATT TGCACAGTGA TCATCAAGGC
AGTATTATTG CTCATAGTAA TAAAAGCGGA TACGTAACTC AAACACTCGC TTATGACACT
TATGGGATCC CCAAACCAAG TAATGACAGC CGTTTTGCTT ATACTGGTCA ACTTCACTTT
AAAGACCTCG GTATATATTA CTATAAAGCC CGTTTTTATC ATCCAAAGCT AGGCCGTTTC
CTGCAAACAG ATCCTGTTTT CTATGAAGAC CAGATGAACA TCTATGCTTA TGTAGGCAAT
GATCCGGTTA ATATGGTTGA TCCAAGTGGG GCCAAATCAT TTTTAGTTAG TCGTCGCTTG
AAATTGCCAG TCAAAGCAAA TCATAATTTC ATTGTTCACC ATGCAAAATA TTTAGGCGAT
CCAAATGCAA TTATTAGATC CTATGGTGAT GTTGGCAATG ACACCATGGG AGAGGTTTAC
AATGATACGA AAGGTTTCTC GGAAGGAACT TTACAAAATG ATACTGCCGC TTGGCTAAGC
TTAAGTACAG AAGGAAGTTC AGTAACTTAT AGAAACATTA ACGCATCTGA TGCAGCTGTA
AGAAAATTAG CAGACTCCTT AATTGGAGGG CTAGAGTACA GTGCTTTGCC TGAACTCCAA
GGGGGAGTAA ATAGTAATAC GGCTGCCGGA GCGATAGCAG AAAAGGCAGA TGATGGCTAC
CCTTTCGTAA ATAATGCTGT TTCACAACCA GGAAGCACAG TAACAAACAG GGTTAATTTT
GAAAGTAATT ATGAGCCGTA TAAACAAGGT TTGGGTGGTA AAATATGCGT TGTAAGTGGT
GCAGGTATGA ATAGATGTCC GAGTAATTAA
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| Protein sequence | MEYSKHFNES TIVLVIIVFA SLLSNFSYAA QNAKPYTTAY RYNLSGQVTG VISPDPDNSG
PLKYIATRNT YNSRGLLTKV ETGELAYWQN ENVKPKNWYG FHRLTEQTTT YNNNGLPVSI
ATSGRNSTNQ FVTSQFKQTS YDQYNRVVCE ATRLTPNSFN NTSISACSAN HSSEFGYDRI
TKYEYDNIGQ ILRVYKAYGT PLQQIYRANE YDNEKIGQLK SITDANNNKT RLTYDSRGRL
EYRYYPDNSY NHYAYNVNND LIQETKRNGK IFKYYYDNNH RLTSKKPPSG LSTSYTYDLR
GLTLSSKFSH PYYGQYSRGV TNTYDGAGNL TSTTIAMGGN DNSPPTFVKT LRFGYDKNNN
RSYINHSDYK SFYYQFDGLD RISNILFPSY SNLIRFAYDR SGGRSIITRA SATGASTSYG
YDNINRLKSF NQNFPSTDKD LTNTFTYNPV NQITSINRSN SIYQYIGNEN LVGSYQVNNL
NQYTNINGKT LTYDNNGNLK SDGTNYYSYD DENRLLTVTG NTNATFVYDP LGRLHETTIN
GVNTKFEFDG DALIAEYNSS GNIINRYVHG DKVDEPLLQF NGNSVVSTNN IRYLHSDHQG
SIIAHSNKSG YVTQTLAYDT YGIPKPSNDS RFAYTGQLHF KDLGIYYYKA RFYHPKLGRF
LQTDPVFYED QMNIYAYVGN DPVNMVDPSG AKSFLVSRRL KLPVKANHNF IVHHAKYLGD
PNAIIRSYGD VGNDTMGEVY NDTKGFSEGT LQNDTAAWLS LSTEGSSVTY RNINASDAAV
RKLADSLIGG LEYSALPELQ GGVNSNTAAG AIAEKADDGY PFVNNAVSQP GSTVTNRVNF
ESNYEPYKQG LGGKICVVSG AGMNRCPSN
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