| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4345 |
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| Symbol | |
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| ID | 6118700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5258091 |
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| End bp | 5259809 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635908 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001762693 |
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| Protein GI | 170728667 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCTA TCGATCTAGG GAAAGAGCTA AATAAGGTTA TAGAGAAGAA ACAGATTACT
GCTCTATTTC AGCCCATTTT CAATATCAAT AATCATAGCT TACATGGTTA TGAGGCCTTA
AGCAGAGGGC CTGCACACAG CCCTTTATAC TCTCCAGTGC CTCTATTTCA AACCGCTGAA
AATCAAGGCA AGCTTTCCGA ATTAGAAGGC TTATGTCGTA GCATCTCTAT CAACCAATTT
AAAACAAAGA GATTAGCTGG CAAGCTATTT ATCAATATCT CACCTAAAGC CTTACTGGAA
CCAAACCACG CAAAAGGGAT GACATTAAGT CTAGTACAGG AACTCGGGCT TTCACCGTCA
CAGGTAGTCA TAGAGCTTTC AGAGCAGTAT CCCGCCGATG ATATCGACAT GCTAAAGTCA
TGTTTAAACC ACTATCGTAA TCAGGGCTTT CTTACCGCCA TCGACGATCT AGGGACTGGA
TACTCCGGAC TACGTCTATG GTCTGAGCTA GCACCAGACT ATGTAAAAAT AGACCGCCAC
TTTATCAATC AAATAGATCA ATCCACTGTG AAGCAGGAGT TTGTCCGCTC CATTATCGAG
CTTTGCCAAA ATCTAACTTG TCAGGTTATT GCCGAAGGGA TAGAGACACA GGAGGAGTTG
GCGATATTGA AGCAACTTGG GATAGTATAT TGCCAAGGTT ATCTACTTGG TATGCCAGAT
AAAAACCCGA ACGGTAAAAT AGAAGCTCAT ATTCATCAAG ACCCAGTAAA AAAGCAGATA
CGCTACGCAG AATCTGCAGA AAGTCTCTGT AATCAAGCTG AAACAGCATC ATCTGAAACC
AAATTGAAAC AGTTAAGCGA TATTTTTATC GCTCAACCCA GCCTACAGAG TATTGTCATA
TTGGTGCAGT CTAAGCCGCA AGGCTTAGTC AGCCGCGCCC AACTCTTGGA GCTATTCAGT
ACTCCCTATG GTCGCGCTCT TCATGAAAAC AGAATCGCAA TTGAGGTGAT GAATACCCAA
GTTGTCACGG TCGATGCTGC CTCCCCAATC TCTCTAGTAA GCCAGTCTTT AACCGCTCAA
AACAGCAGCT TTATGGCGCA AGAGTTTATT ATTATGCGTC ACGGGAAACT ACTAGGAATA
GGTCATACCA AAGATCTTTT GCAGTTGTTA ACCGAGCAGA GAATTAAACT GGCTCGTCAC
GCTAACCCCC TTTCAGGGCT TCCTGGTAAT ATTCCTATTC AGGAGGAGAT CAAGCGACTT
AAGCAACAGA AAAAGCCATT TTATCTTGCC TACTTCGATC TCAACAACTT CAAGCCTTAC
AATGATATCT ATGGATTTTG TCGTGGCGAT GAGGTCATTT TAGAGGTGTC AGGAATACTC
GAGTCACACC ACAACAGTGA TAATTTTATC GGCCATGTAG GTGGAGATGA CTTTGTCATC
ATCAGCACAA GTCAAAATAT ACAATCTGTT TGTCAGCAAG TGCTTATCGA TTTTGATCAA
AAAAAGCGGT TATTCTATTC CAATGAACAT TGGCAGGCTA GGAAGATGCA AGCCGAAGAT
CGTTTAGGAC AAGCATGTGA GTTCGACTTA ATTGGTCTCT GTGTGGGGCT ACTCTCACCC
GCTATTACCT CAGGGGCAAA TGCCCATGAA CTTTCTATCT ATAGTGCGGA TGCAAAAAAA
CAGGCTAAAA AAGCGGTGAG CTCCTTTAGC CTGTTATGA
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| Protein sequence | MSAIDLGKEL NKVIEKKQIT ALFQPIFNIN NHSLHGYEAL SRGPAHSPLY SPVPLFQTAE
NQGKLSELEG LCRSISINQF KTKRLAGKLF INISPKALLE PNHAKGMTLS LVQELGLSPS
QVVIELSEQY PADDIDMLKS CLNHYRNQGF LTAIDDLGTG YSGLRLWSEL APDYVKIDRH
FINQIDQSTV KQEFVRSIIE LCQNLTCQVI AEGIETQEEL AILKQLGIVY CQGYLLGMPD
KNPNGKIEAH IHQDPVKKQI RYAESAESLC NQAETASSET KLKQLSDIFI AQPSLQSIVI
LVQSKPQGLV SRAQLLELFS TPYGRALHEN RIAIEVMNTQ VVTVDAASPI SLVSQSLTAQ
NSSFMAQEFI IMRHGKLLGI GHTKDLLQLL TEQRIKLARH ANPLSGLPGN IPIQEEIKRL
KQQKKPFYLA YFDLNNFKPY NDIYGFCRGD EVILEVSGIL ESHHNSDNFI GHVGGDDFVI
ISTSQNIQSV CQQVLIDFDQ KKRLFYSNEH WQARKMQAED RLGQACEFDL IGLCVGLLSP
AITSGANAHE LSIYSADAKK QAKKAVSSFS LL
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