| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4322 |
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| Symbol | |
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| ID | 6118677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5230509 |
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| End bp | 5234246 |
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| Gene Length | 3738 bp |
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| Protein Length | 1245 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641635885 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001762670 |
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| Protein GI | 170728644 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAGT CAGTTCGTGT TACTCAAGGG CCAAGCATGA AACCGACTGA GCCGGATCTT
CAACTGAAGT CACCGATACA GAAAAACTAT AACCGCGCTG TTTTCTATAC CTATATTGGT
GTGATCATCA TGGCCTTGAT CACGGCCTGG TTTTTCTTCG AGCGTCAAAA AACTCAGTTA
ATGGATTTAA GAGAGCAACA GGTAGAACGC CACGTTCTCC AAGTTGATCT GCTGCTTGAG
TCCAGTATCC GGGCGGTCAA GAGTCTTCGT AATGTTGCTA TCGATCACTT GAGACTCGGT
GAGCTGGTGC GTACAGATAG ACTGCCTCAA TATGAAAAGT TTAATGAGAG TGGTCAATAT
TTTACCTTAG AGCCGAGTTA TGCCCAGAGC GGTGAACCCT TTACTAACAT GGGACGTATT
ACAGGATCTG GCTCGCTCAA CGGCCGTAGC GATAAGTTCT ATCAAGAGCT GGAGATGTTG
TTTGAATTGT CTCTCTCTTT TCCGGTTGCA ACTGAAGCTG CCCCAAAAGC CTCTTCCATC
TACTACATCT CAAAACGTAG GATTATGTCC TACTTTCCTT GGCCTGCCGA TGAACAGAGA
TTTAGAGAGG AGCTGCTTAA TAAAAACCAG TTTCAGCTAG CCACGCCAGC GATGAACCCC
CAGCGCACTG TATTTTGGAG TCCAGCCTAT GTGGATCCCA ATAAAAAAGA GTTGCTGACT
ACCTTAGGTG TTCCTATCTA CTTGCAGGAT GAGTTTATCG GCTCTATCAA TCTAGATATG
ACACTGTCGT CACTTGCGAG GCAGATCCGT CTCTACTTTA AGATGCCGGG CACAGTGATC
TTATTAGACC AGAAGAACAA TATTCTCTCC CATAGTGGTG ATGACAGTAC CGATATGAGT
CGGGTGTACC ATATTAGTCA GAAAATCCCC TCTGAGCTTC ACTCTATTCC AGAGTCTGAA
CTGTTCGATG CCCACGAAGG CTTGATACGT AACGGCTATT ATATTCACTC GGTTGCTCTG
CAAAATGCTC CGTGGCGGCT GCTCTACCTA CAAGAGGAGA CCGAGCTATT TAAAGATTCT
TGGGAGAAAC TAGAGCTGAC CTTTATCTTG GTGGTACTGG CGCTCTCTGT GCTGGTGACC
ATAGTGCATT GGCAGACCCG CCGCTCTTTC GTTAATCCTG CTTCTCAGCT ACTGACTCAT
CTTGAGGGGT GCTCGCAAGA GCCAAGAAAA CCACCGGAGA GAATGACAAT AGGCTGGGAG
CCATGGTTCC AGCTGGTGAG TCGTATTTTT GAAGAGAACC AGCAATATAC AAGGCACTTG
GCCGAACAAA ATCGTCGTCT GGATAAACTG GTTGCCCGCC GAACCGAGCG ACTTAAAGAG
ACCACTGAGC GTCGTGAGCG TGAATACGCA CTGCTTCGTT CACTGCTCGA CTCTATTCCT
GAGGCGATTG TATTTAAAGA TAAAGAGGGC AAATACCTAG GTTGTAATAA GTCCGCTGAA
CGTATGCTTG GTTATACCGA GAGTGAGATG ATTGGCCAAG AGAGCATCAA ACTCACCTCT
GAGGAGCAAT CGGTACGGAT AAAAGCGGAA GACGGGCGGG TTCTGTCTGA GCGAACGCCT
CTGCGTTATC AGGAGAAAGT AGAGCTGGCG GGTAAGCCAG TACTCTTAGA TACTCTTAAG
CTGCCTTTTT ATAACCGACG CGGTGAGCTG TTGGGTCTGA TTGCCGTATG GCGTGACGTG
ACCCGTGAAT ATGAGTCTGC GGAGCAGTTA AGGCTATCTG AGGAGCGTTA CCATCTGGCC
ATGGATGCGG TAGAAGATGG TCTGTGGGAT TGGTATCTCG ACTCTGAGCA GATTATCTGT
AATCCAGCTT ACTACTCAAT GTTAGGCTAC AAAACTAATG AGTTTCCGGC TCTGGTCTCA
ACCATAGATG CATTGATTCA TCCCGACGAT CGCATTCGTG TCGAAGAGTA TCGTGATGAA
TATTTGTCCG ATCCTATTGG TGCTTTCGAT ATCGAATTTA GGATGAAGGG CAAGAGTGGC
GAATACCACT GGCTACTCTC CCGTGGTCGT GTGGTTGAGT TCACCACAGA TAATCAGCCT
AAGCGTATGG TGGGAACCCA TAAGGATATT ACTCGTCATA AGAGTAACGA AGTGGTGATG
TTAGAGGCTA AGCAGGATGC AGAATCAGCC AACCTGTATA AGAGTGAGTT CTTGGCAAAT
ATGAGCCATG AGATCCGTAC GCCGATGAAC GCCATTATCG GTATGCTTCA GCTAGCACAG
CGTACGTCGC TGACTCCTCA GCAGGAGGAT TATCTTGATA AAGCAGGCTT CTCAGCTCAA
TCACTGCTGC GGATTATCAA CGATATTCTC GATTTCTCTA AGATTGAAGC GGGTAAATTG
GAGTTGGAGC GGGTCTCATT TCCACTTGAT AAGGTGCTAG ATCATGCCTT AGACCTCAAT
GCCTTAAAAG CACAGGAGAA GGGGGTTGAG TTACTGCTTT ATGCACCTGT TACCGCAGGT
CTAATTCTAG AAGGCGATCC TCTGCGTCTG GGGCAGGTTT TGATCAACAT GCTCTCAAAC
GCAGTTAAGT TTACCCAAAG TGGTGAGATT GAGCTGGGTT GTGAAGATGT GGGTGAGCGA
GATCATCGTA TTACGCTTAA GTTTTGGGTG CGTGATACCG GAATTGGCAT CAGTAAAGAG
CAGCAGGAGA GCCTGTTTGA TGCTTTCGCT CAAGCCGATG GTTCGACAAC CCGTAAGTAT
GGCGGTACAG GTCTAGGGCT TTCAATCAGT AAACATTTAG TCTCTATGAT GGGCGGCACT
ATGCAGGTGC AGAGTGAGAT GGGAGTGGGC AGTACCTTTA GCTTCACCAT TAGCTTCGAG
ATCGCCGAAG AGGCTGAAGT TAAGCCTATG ATAGTGCCAG CAAAGCTAGC TAACCTTAAA
GCTTTAGTGG TGGATGATAA TCCTACTGCG CTGCAGATCT ACTCGACCAT CATGCAGGAT
TTCAAGTTTG ACGTTGATAC CGCGGCGAGT GGCTCAGAAG CTATCTACAA ACTGGGTAAG
TCTTCGGTTG ATCTATTACT GCTCGACTGG ATGATGCCGG AGATGGATGG CATCGCTGTG
ATTGAAGAAC TAGACCGTAT GGTGGCTGAC GGTCGCTTGG ATAGTCGCCC TATTATCATC
ATGATGACAG CCTACGCGGC AGAGCCGTTA AAAGAGGATG CGGATAAATC GAATATCTAC
GCCATGTTGC AAAAGCCCTT CAAAGCCTCT GCACTCTTTG ATGAGATTAT CTCAGCCTTT
GTCGATGCGC CTAAACTCAA TCCAGTTAAG GAGTTGACCG AAGAGAAAGT GAATGAAGTT
TCTGGTCGAA TCCTCTTAGT TGAAGATAAC TTTATTAACC AACAAGTGGC GACTGAACTG
TTAAAAAGTG CAGGTTATGA GGTTGATGTG GCTGATAATG GTCAAATTGC TTTAGATATG
ATTGCAGATA ATGACTATGA AGCGGTATTG ATGGATATTC AGATGCCAGT GATGGACGGC
TTAACAGCGA CCAGAGAGCT GCGTAAACAC TACAATCAGT CAGAGCTACC TGTGATAGCC
ATGACCGCCC ACGCAATGTC AGGTGATAGA GAGAAGAGTT TAGATGCGGG AATGAATGCC
CATATCACCA AGCCTATTGT GTTGAATGAG CTGTTTGATA CCTTAAGTTA TTGGATAAAT
ACCAATCCTA CTAAATAG
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| Protein sequence | MPESVRVTQG PSMKPTEPDL QLKSPIQKNY NRAVFYTYIG VIIMALITAW FFFERQKTQL
MDLREQQVER HVLQVDLLLE SSIRAVKSLR NVAIDHLRLG ELVRTDRLPQ YEKFNESGQY
FTLEPSYAQS GEPFTNMGRI TGSGSLNGRS DKFYQELEML FELSLSFPVA TEAAPKASSI
YYISKRRIMS YFPWPADEQR FREELLNKNQ FQLATPAMNP QRTVFWSPAY VDPNKKELLT
TLGVPIYLQD EFIGSINLDM TLSSLARQIR LYFKMPGTVI LLDQKNNILS HSGDDSTDMS
RVYHISQKIP SELHSIPESE LFDAHEGLIR NGYYIHSVAL QNAPWRLLYL QEETELFKDS
WEKLELTFIL VVLALSVLVT IVHWQTRRSF VNPASQLLTH LEGCSQEPRK PPERMTIGWE
PWFQLVSRIF EENQQYTRHL AEQNRRLDKL VARRTERLKE TTERREREYA LLRSLLDSIP
EAIVFKDKEG KYLGCNKSAE RMLGYTESEM IGQESIKLTS EEQSVRIKAE DGRVLSERTP
LRYQEKVELA GKPVLLDTLK LPFYNRRGEL LGLIAVWRDV TREYESAEQL RLSEERYHLA
MDAVEDGLWD WYLDSEQIIC NPAYYSMLGY KTNEFPALVS TIDALIHPDD RIRVEEYRDE
YLSDPIGAFD IEFRMKGKSG EYHWLLSRGR VVEFTTDNQP KRMVGTHKDI TRHKSNEVVM
LEAKQDAESA NLYKSEFLAN MSHEIRTPMN AIIGMLQLAQ RTSLTPQQED YLDKAGFSAQ
SLLRIINDIL DFSKIEAGKL ELERVSFPLD KVLDHALDLN ALKAQEKGVE LLLYAPVTAG
LILEGDPLRL GQVLINMLSN AVKFTQSGEI ELGCEDVGER DHRITLKFWV RDTGIGISKE
QQESLFDAFA QADGSTTRKY GGTGLGLSIS KHLVSMMGGT MQVQSEMGVG STFSFTISFE
IAEEAEVKPM IVPAKLANLK ALVVDDNPTA LQIYSTIMQD FKFDVDTAAS GSEAIYKLGK
SSVDLLLLDW MMPEMDGIAV IEELDRMVAD GRLDSRPIII MMTAYAAEPL KEDADKSNIY
AMLQKPFKAS ALFDEIISAF VDAPKLNPVK ELTEEKVNEV SGRILLVEDN FINQQVATEL
LKSAGYEVDV ADNGQIALDM IADNDYEAVL MDIQMPVMDG LTATRELRKH YNQSELPVIA
MTAHAMSGDR EKSLDAGMNA HITKPIVLNE LFDTLSYWIN TNPTK
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