Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4312 |
Symbol | |
ID | 6118667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5217940 |
End bp | 5219508 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641635875 |
Product | polysaccharide deacetylase |
Protein accession | YP_001762660 |
Protein GI | 170728634 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0365269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGTTAA TTGGGTTTAG CAAAGTATCA AGGTATATCG AGCGAGTTAT GTTTTGGAGT GTGCCGTTAT TAGTGCTCTG TGCAGTACTA TTGCTATCGG CTTGTGGGGG GCGTGGCTCA GCAAATCAAG CATCGATAGA CAAGGCACCC GTTGAGCTTG TTAACCTAAG GACGAATATT GAGATAGCAG GTGTTGATTA TAAGCCCATA TTAGATGAGC TTGATTTATC TACCTACTGG ATAGCGACAA GTGAGCCTAC TGAGCCTATG TTGTCAGCGC TTAATACTCA ACTGGCTAGC TTGTCAGGTA TCTTTGCTGA GCAGTTCTCC CTTGAAACTT TTGCGATGGG GATCCAGTTG GATCCTTTGC AAGAGCAAGC CATCATCATT GATGCTTCAG CCTCTAAATT AGGCCAAAGC CGGTTGATAG TCACATTAGC TGGTAGCTTG CCAGACGAGG AGTTGAGTCA ACCGCTGGCA GCAGGTATCT ATTTAGCATT AAGGCGAGCA CATCAAGCTG ATGCAGATCT ACTTGAAAAG CTCGTCAGTC ATGGTCTAGC ACTGAATTTT GTTGAGTCAG AGCTTAAACC CAAAGTGCTT TATCAAGATG TTCAAATATT GAAACCAGCA CTTAATGATG CGATAGACCT CGCTAAAAAG GCGCTCAAGT CGGGGGATGA CCTCAAAGCT TGGTTTGATC CTGTAACTCA TGATTTTATA GATAACGGTA CTGGATTGAA GTTAGCTTAC TACCTGACAA GTCAGCACTT TAACCGATAC CCTGGCAGCA GCGCAGCGAA TACTTTCTCA CTTGATGCTG ACCTATTTAG CGTCAACTTA GCTGCACCCG TTAAGCTCTC TCATAAGTCT GCGCAATATG TCAGAACTAG TGATGTAGCT GATCAAGTGG GTGTGAGTGA GTTGACAAGG CAGGCCAGTG ATTTCTTAGG CAGCTATTTT TTAGAGGGGT GGAATCAAGA GAAGCTTATC GCATTAACCT TCGATGATGG GCCATCAAGC TATACGACTC AAATATTAGA TATTCTCTCC CAGAGAAAGG TCAAAGCTAG CTTCTTCTGG ATGGGATTGA ACATGCAAAC GAATCAATCG ATTATGGAAA GGGCATTGAG TGAGGGACAC ACACTTGCCA ACCATAGCTG GAATCATCCA CATGGGCGTG AGTTAAGTGA TCAGCAGCTT TGGCAAGAGC AGGTTTTGAA GACAAATGAG CTGTTTCAAG ACTCACTTGG GATCACACCG CGATTTTATC GCCCTCCATA CGGTGAAATA AGCGATGAGC AAATAGCCTT TCTTGATGAG AAGGGGATGA AAGTTATCTT GTGGTCGGTA GATACTCGAG ATTGGAACTC GCCCATTGTT ACCTCCAAAA ATATCAGCGA CGTGATGATT AATAACCATC ATCCAGAAGT GATTAACTTG ATGCATGATG CGGGCGGCGA TAGGCAAAGT ACCGTTAATT CACTACCAAA GATTATCGAT TATTACCGTA GCCAAGGTTA CCGTTTCGTT AACTTACAAG AGATGCTCGG CATAAGCGAT AGAAGCTAG
|
Protein sequence | MALIGFSKVS RYIERVMFWS VPLLVLCAVL LLSACGGRGS ANQASIDKAP VELVNLRTNI EIAGVDYKPI LDELDLSTYW IATSEPTEPM LSALNTQLAS LSGIFAEQFS LETFAMGIQL DPLQEQAIII DASASKLGQS RLIVTLAGSL PDEELSQPLA AGIYLALRRA HQADADLLEK LVSHGLALNF VESELKPKVL YQDVQILKPA LNDAIDLAKK ALKSGDDLKA WFDPVTHDFI DNGTGLKLAY YLTSQHFNRY PGSSAANTFS LDADLFSVNL AAPVKLSHKS AQYVRTSDVA DQVGVSELTR QASDFLGSYF LEGWNQEKLI ALTFDDGPSS YTTQILDILS QRKVKASFFW MGLNMQTNQS IMERALSEGH TLANHSWNHP HGRELSDQQL WQEQVLKTNE LFQDSLGITP RFYRPPYGEI SDEQIAFLDE KGMKVILWSV DTRDWNSPIV TSKNISDVMI NNHHPEVINL MHDAGGDRQS TVNSLPKIID YYRSQGYRFV NLQEMLGISD RS
|
| |