| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4290 |
|---|
| Symbol | |
|---|
| ID | 6118645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5198064 |
|---|
| End bp | 5200166 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635855 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001762640 |
|---|
| Protein GI | 170728614 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA TCGTATTTAG GGTACACCCA ACCGTTAATT TTGCTCGCTT TGGTACCAGT
GAGGAGTATA TTCTTTCGCC CGAAACCAGT GCTGGACTGC CTCAAAAGGA GAGCAATGTA
ACCGGTGGTC TTCCTATTAA AGAGGGAACT GATAACACGC CTATCACCAG TAAAGATCTG
CGTGATGAAG ACGGTAACTT AAAGAAGCAA GCTGCCCGTT TTCGTATCTA TGCCTACGAA
AAACAGAGTG AGGCCACTTA CCCCGATAAC AACGGCCTTA AAGACAGTAA AGGGGCTGAT
ATTGAGGTAA CTATCGGTAC CAAGTTACCT GATGGCCGCA CAGTGACAGA CCTAGTCTGG
TCAAGTCACC TAGCCAATAA AAAGGCTGCG GTCTATAACG TGGTTAATAA CAAGGGAATT
AAGGCTTATG CCGATGGCAA AGTTCCGCAG TTGCGTAACC CTGAAGTGCA TGGGGAGATA
GATGACCCTT CACGACTTAA TGTCTTGATG ATTGATGCCG GACCAAGGGC TATTCGTGCC
TCAAGCAATG AAACGGCCAG TTTTAGTCGC TGCACAAAAG CTTCGTGTGT CAAAGGCTGT
GCCCAGATAG AGCCGCTACC TAATTATCCG ATCCGCTTTC CTGAAGATTA TAATGATGAG
CTTTATGAGC CTAATGGTCC ATTAAATACC TTAGGTGAGA TGCTCACCGA TGATCAGGGG
CGTTTGCTGG TTTTGCCTAG TACAGGTAAT GCAGTGGGCC AATATGATGA GTATGGTGTG
CCGATACAGA TGACTGGCGA TCTTAATAAT GTTGGCTGGT TTGATTCTGC CGCCGACGGT
CCCGTTAATG TCACGCTTGT CTTTGATGAT GGTAGCACCG AAGAGGCGTT CGGTGCCTGG
GTAGTCTGTG GGGATCCCGC TTATGCGCCG CAGATACGTA ATGTTGTCTC AGTGTGGGAT
GATGTTTATG ACATGTTTGT GAGAGATTTA AGCTTACAAG ATAACCTCTA CTGCAAAAAA
AGTGGTGAGT CAGAAGGCAG TTATAAAGAG AGTTACAAGC CAAACTTTGC CGAAGATATT
AAACCTATTT TTATCGCCTG CGATCTGCAG CGTTGGACTG CTAACTTGCC ACCTATGGCA
TTGCATGCTC ACAGTGCTGT CATGAATATT ACAGAGCAGA ACGACCCAAA TGAAACCATT
ATGGCGGCGC TCAATTTTGT GAGGAACCCC AATAAGGATG AAACAAATAT AGGTGCCCCA
TTGATGCCTC TATCTTTAGG TGCCGCAGGG ACGTCCTTTA TGACGGTCAC TAAAACTCAG
TACTTTATGT TGGAGCAGTG GAGTAAAGGC CAGTTCACTA AAGGGGACGA GAGTAAGCTC
TCTGCCGGTG AGCGAATTGA TATGGCGTCA ATGGCAAACT GTCTTGGTGG TCGCTACGTG
CCGGGTATTG AGGTGAGCTA TACCATTATG GATAGGGAGA TCTATATTCA GGATTGGAAA
GAGTCAGGTT CTGGACCATT TCGAATCAAA CATGATGCTG CAGTATTAGG GTATAACAAT
CTACAGAAAG ATATCCCCTA TCTCACTAGT GGCTGGATCC CTCTGCACGA CATGAGAGAT
GGGCTGCAAC CAGGTGATAT CTCTAAGTTC ATGGCAACCC CTTGGCAGAC GGATTACAAC
TCTTGCTCTA TTCACGCCAC AGCAATTAAT ACCGATGGGG TGAATAAAAG CAACGGCGCA
GAATCGACCT TGTACTGGTC ATGGCCTGCA CAGCGTCCTG ATGCGGTCTA TGTTGCAGAG
GAGGTGTTTA ATAATGTACT GCCGAAACAG CAGTGGTCTA TTCGAGGACC GGGAACCTAC
GCGATAAACC CTGCCGCGGC AGCCACCTTT CAAGATCCAT TACAGTCAGT TAATGACTGG
CATAAGATAG GCTTCATTAT TCAGGGCTCT AACGTGGAGA TAGGTACACA AAAGTTCTCT
TCTGAGCTCT ACCTTGAAGT GCAGAGCCAA CTTAGCAGAT CTGGTGATGC AACGGATCCG
GTACCAGCAT GGCCATTTAA TGCTAATCAA CCAAAAGCAA AGCGAAAGTG TTCACATAAA
TAG
|
|---|
| Protein sequence | MNNIVFRVHP TVNFARFGTS EEYILSPETS AGLPQKESNV TGGLPIKEGT DNTPITSKDL
RDEDGNLKKQ AARFRIYAYE KQSEATYPDN NGLKDSKGAD IEVTIGTKLP DGRTVTDLVW
SSHLANKKAA VYNVVNNKGI KAYADGKVPQ LRNPEVHGEI DDPSRLNVLM IDAGPRAIRA
SSNETASFSR CTKASCVKGC AQIEPLPNYP IRFPEDYNDE LYEPNGPLNT LGEMLTDDQG
RLLVLPSTGN AVGQYDEYGV PIQMTGDLNN VGWFDSAADG PVNVTLVFDD GSTEEAFGAW
VVCGDPAYAP QIRNVVSVWD DVYDMFVRDL SLQDNLYCKK SGESEGSYKE SYKPNFAEDI
KPIFIACDLQ RWTANLPPMA LHAHSAVMNI TEQNDPNETI MAALNFVRNP NKDETNIGAP
LMPLSLGAAG TSFMTVTKTQ YFMLEQWSKG QFTKGDESKL SAGERIDMAS MANCLGGRYV
PGIEVSYTIM DREIYIQDWK ESGSGPFRIK HDAAVLGYNN LQKDIPYLTS GWIPLHDMRD
GLQPGDISKF MATPWQTDYN SCSIHATAIN TDGVNKSNGA ESTLYWSWPA QRPDAVYVAE
EVFNNVLPKQ QWSIRGPGTY AINPAAAATF QDPLQSVNDW HKIGFIIQGS NVEIGTQKFS
SELYLEVQSQ LSRSGDATDP VPAWPFNANQ PKAKRKCSHK
|
|---|
| |