| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4280 |
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| Symbol | |
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| ID | 6118635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5184609 |
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| End bp | 5186999 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641635846 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001762631 |
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| Protein GI | 170728605 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATAA AGAAATGGTT TAACAGTAAA ACTGCCATTA TCGTTGCTGG CATCCTTCTA
ACCGCTTATC TATTTTTAAT TTTGACCGTG ACAAACCTAG GTCAAAGCAG GCTAAAAGAG
TCACAGAATA ACGCATTAGA TTTAAAGATC AGTAATTACA CTGATAATTT AAGTTTCTTC
TTCGATGTGA GTCAGGAGAG TATTGGTAAT CTTGCCAATA ATAGGGCAAT AAGTGCCTAT
TTTTCCAATC TTGCGGCTGG TATGTCGATG CAGTACGGAC TAGGTTCCAG CCTGTTTAAT
CTTAGACAAA CCATCAATAG CTTTGCTCAA ACAAGCAAGA TTGATAACCA TCAAATCTAT
CGAAGGCTTC TCGTTGTGGG GTTCGGTAAA ACGGTGATTG CCGATACCGA GCTAGATTCT
CCCTTTGATA TGAGTCAGAT CCCCATGGCT GCGATGGAGA AGGTGGGCAC TAAGATATTG
ATGTTATCGA CCCCAGAGGG GCCGGTTATT ACTTTGCTGC ACACGATATA TCATCAAGAT
AAACCTGCAG GAATACTGAT TGCCGAGATA GATAATAATG TCGTTATTCA TCAGCTTTCA
ACTCAAGAAC ATAAAAGTAA TGGCAGCTGT TTGAAGTTAG TTACGCCACT TGGGGAGATC
TTGGTCTGGG ATTCACTTAA ACCTTTGACT GGGCTGAATC CTATCTTGAA ATTTACGCCT
ACCGAGCCAT TTAGGGCCAG TACAGCGTTT AATCCTGGAA AGGCACAAAG TCACGATAAT
ATTTCATCCC ATAATATCTA TTTTGAGAAA GAGGTTTCAG GCACGCCCTT TAAACTGACC
AGTTGGTTTG AGCCTGTTAA TGAGCAGGAT ATCTTCACAT CTGCTTGGTT TATTGCGGGG
ATCTCTCTGC TTGCCCTACC TGTGATGTTA GGTTTGTTGT ATCTGATGAG GGTGAATAAT
ACTAACCTGG TACTTCAGAC TCAGGTTGCT TCTGTCTCTG AGCAGCAGCA GAAATTAACC
AATCAGAATG TCCTGTTACT TGAGGAGGTT GATAAGCGTA AAGCCTCAGA GAACAAGCTT
GCCTATCAAG CGACCCATGA TGAACTGACA GGTCTTGCTA ATCGAACGCA CAGTATGAGT
CGGCTTGCTC AGTCCATTGA GTCTGCTCAG GTTAATAACA CTAAGGTGTT AGTGATGTTC
CTCGATCTGG ATAATTTTAA ACAGGTCAAT GATACCGTAG GGCATCATGC GGGAGATGAG
CTGTTAAAAC TCACCAGTAA GCGCCTATTA AACTCAGTAC GTAATACCGA TACTGTGGCG
AGGTTTGGTG GAGATGAGTT TCTTATCATT ATTCCTGAGC TGCCCCATCA AAATATGGCA
AAGATGTTGG CGAGTTCAAT ACTGACGCTA TTTGAACAGG CATTTAAGAT TGAAGGGCAG
GAGTTTTTTG TCTCAACCAG TATTGGTATG TCTATCTATC CACAAGATGG TGACACGGCT
GCGACACTGC TTAAGAAGGC GGATACCTCT CTCTATCGAG CCAAGGATGC AGGGCGTAAC
GGTTTTAGTT TTTATAACGA CAGTATGAAC CAAGATATTC AGCGTAAGTT GACCTTAAAT
GTCCGTCTGC ACCAAGCGAT AAGTTTGGAT GATATTGAGA TCTACTATCA GCCCATTTTA
GACTTGGCGA GTCGTAAGAT TATTGGTGCT GAGGCATTGA TGCGTTGGAC CGACAGTGAA
CTTGGGGTTG TATCACCGGA TGAGTTTATT CCACTCGCTG AAAAGAACGG CTTGATCCAT
AAATTGGGAG ATATTGTTCT GCAGCGGGCG TGCTCACAGG CAGCGAGTTG GCAATCTATC
ACTCCACTAA AAATGGCGAT TAACTTCTCC AGTGTTCAGT TTCGCTATAG TGAGCAGTTG
CAGGCAAGGA TCGTTGAAGT ATTAGCACAA ACAGGCCTTC CCGCTGACAA ACTCGATATG
GAGGTGACAG AGAGCCTGTT AATCGATCAA GAAAGCGGAT TGATGACCAT GCTGGCTTAC
TTGAAACAGC TGGGAATTGA GATGTCGATT GATGATTTTG GTACTGGTTA TTCAGCGTTA
AGTTATCTGC AGAAGTTCTC GTTTTCGAAG TTGAAAATTG ATCGGGCTTT TATCAATAAG
ATGGCAAGCA GTAAGTCCGA TAAAGCGCTA GTTACCGCAA TTCTTGCTAT GGCTAAATCG
CTAGAGATGA AAGTGGTAGC GGAGGGGATT GAGGATGAGC AGCAGGCGCA ATTCCTGCAA
AGCCACGGCT GTGAGTTTGG TCAGGGCTAT CTGTTTAGTC GTCCAGTCAC TGCGGAGGCA
TTTACTCAGC TCTTGATGGA GCAGGAGAGC TTAGGCGTCG CGACCGCTTA A
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| Protein sequence | MNIKKWFNSK TAIIVAGILL TAYLFLILTV TNLGQSRLKE SQNNALDLKI SNYTDNLSFF
FDVSQESIGN LANNRAISAY FSNLAAGMSM QYGLGSSLFN LRQTINSFAQ TSKIDNHQIY
RRLLVVGFGK TVIADTELDS PFDMSQIPMA AMEKVGTKIL MLSTPEGPVI TLLHTIYHQD
KPAGILIAEI DNNVVIHQLS TQEHKSNGSC LKLVTPLGEI LVWDSLKPLT GLNPILKFTP
TEPFRASTAF NPGKAQSHDN ISSHNIYFEK EVSGTPFKLT SWFEPVNEQD IFTSAWFIAG
ISLLALPVML GLLYLMRVNN TNLVLQTQVA SVSEQQQKLT NQNVLLLEEV DKRKASENKL
AYQATHDELT GLANRTHSMS RLAQSIESAQ VNNTKVLVMF LDLDNFKQVN DTVGHHAGDE
LLKLTSKRLL NSVRNTDTVA RFGGDEFLII IPELPHQNMA KMLASSILTL FEQAFKIEGQ
EFFVSTSIGM SIYPQDGDTA ATLLKKADTS LYRAKDAGRN GFSFYNDSMN QDIQRKLTLN
VRLHQAISLD DIEIYYQPIL DLASRKIIGA EALMRWTDSE LGVVSPDEFI PLAEKNGLIH
KLGDIVLQRA CSQAASWQSI TPLKMAINFS SVQFRYSEQL QARIVEVLAQ TGLPADKLDM
EVTESLLIDQ ESGLMTMLAY LKQLGIEMSI DDFGTGYSAL SYLQKFSFSK LKIDRAFINK
MASSKSDKAL VTAILAMAKS LEMKVVAEGI EDEQQAQFLQ SHGCEFGQGY LFSRPVTAEA
FTQLLMEQES LGVATA
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