| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4238 |
|---|
| Symbol | |
|---|
| ID | 6118593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5139813 |
|---|
| End bp | 5140403 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641635804 |
|---|
| Product | lipopolysaccharide transport periplasmic protein LptA |
|---|
| Protein accession | YP_001762589 |
|---|
| Protein GI | 170728563 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000789736 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAA ATACAGGCAT CATCACAGCA CTACTCTGCT TAATAAGCTT TAGTAGTGTG
GCAAAAGTCG ATGATCTAAA ACAAGAAGTT AAAATCTCTG CAGCAAGTCA GGAAGCAGAT
ATTAAAAATA ACCAGATCAT CTTTAATGGC CCAGTTGAAG TCGTTCAGGG CTCAGTTAAA
ATCAATGCCG ATAAGCTTAG AGCCTTTACC AAAGAGGGGT CTAACGGACG TATCTTAGTC
GCTACGGGGA ATCCAGCAAC TTACTCACAG ATAATGGAAG ATGGCCGTCC AGCCAACGCC
AGCGCAAAAG AGATCCGCTA CGAGTTATCA AAACGCACTC TTATTCTGAA GGGTAATGCG
ACGCTTGAGC AAGATGGTAG CCAAGTTACA GGTAATCAGA TTCAATATAA CATTGAAAAG
CAGCAGCTTA TTGCTGAAAG TACAGGTAGC GAAAGGGTCA TCACCATTAT CCAACCTGAA
AATTACCAGG ATGAGTCTAA GCCTAAAACA GATAGCAACA AAGAGACTCA ACCTGAAACA
AAGCCAGAGA TACCTGTAGA ACCTGCAGTT AACGCTCAGG AGATCGAATG A
|
|---|
| Protein sequence | MKQNTGIITA LLCLISFSSV AKVDDLKQEV KISAASQEAD IKNNQIIFNG PVEVVQGSVK
INADKLRAFT KEGSNGRILV ATGNPATYSQ IMEDGRPANA SAKEIRYELS KRTLILKGNA
TLEQDGSQVT GNQIQYNIEK QQLIAESTGS ERVITIIQPE NYQDESKPKT DSNKETQPET
KPEIPVEPAV NAQEIE
|
|---|
| |