Gene Swoo_4236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4236 
Symbol 
ID6118591 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5138633 
End bp5139184 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content46% 
IMG OID641635802 
Product3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 
Protein accessionYP_001762587 
Protein GI170728561 
COG category[R] General function prediction only 
COG ID[COG1778] Low specificity phosphatase (HAD superfamily) 
TIGRFAM ID[TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00032903 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACACC AAGGTTTTTA CGGTCCAATA GAGGATACTG TTTGGCAAAA GGCCAGTAAG 
ATCAAGCTTC TAATATGTGA TGTAGATGGA GTATTCTCCG ACGGTTTAGT CTATATGAGT
AACACGGGCG ATGAACTTAA AACCTTCCAT ACCCGTGACG GTTACGGCGT CAGATCTCTG
CTCACCAGTG ATATTCCTGT CGCCATTATT ACCGGCAGAA AATCTAAGAT TGTCGAAGAT
CGCATGACAG CCCTAGGGAT CACCCATATC TATCAAGGCG TCGATGACAA ACTGACTCCC
TATCAGGAGC TACTCTCTTT ATACAAGGTA ACGCCAGAAG AGGTCGCATA TATCGGCGAT
GATATGGTTG ACCTACCAGT GATGAAACAG GTTGGTTTAT CGGTATGTGT TGCTGACGGC
CATCCTTATG TTCAGCAAGG TGCCGATTTT GTTACTCATA TCAAGGGAGG CCACGGCGCC
CTACGTGAGT TGACAGATCT ACTGCTTCTT AGCCAGAATA AGTTCGAAAC GGCTCATGGA
ATGAGTATAT GA
 
Protein sequence
MSHQGFYGPI EDTVWQKASK IKLLICDVDG VFSDGLVYMS NTGDELKTFH TRDGYGVRSL 
LTSDIPVAII TGRKSKIVED RMTALGITHI YQGVDDKLTP YQELLSLYKV TPEEVAYIGD
DMVDLPVMKQ VGLSVCVADG HPYVQQGADF VTHIKGGHGA LRELTDLLLL SQNKFETAHG
MSI