Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4236 |
Symbol | |
ID | 6118591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5138633 |
End bp | 5139184 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641635802 |
Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
Protein accession | YP_001762587 |
Protein GI | 170728561 |
COG category | [R] General function prediction only |
COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA [TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00032903 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCACACC AAGGTTTTTA CGGTCCAATA GAGGATACTG TTTGGCAAAA GGCCAGTAAG ATCAAGCTTC TAATATGTGA TGTAGATGGA GTATTCTCCG ACGGTTTAGT CTATATGAGT AACACGGGCG ATGAACTTAA AACCTTCCAT ACCCGTGACG GTTACGGCGT CAGATCTCTG CTCACCAGTG ATATTCCTGT CGCCATTATT ACCGGCAGAA AATCTAAGAT TGTCGAAGAT CGCATGACAG CCCTAGGGAT CACCCATATC TATCAAGGCG TCGATGACAA ACTGACTCCC TATCAGGAGC TACTCTCTTT ATACAAGGTA ACGCCAGAAG AGGTCGCATA TATCGGCGAT GATATGGTTG ACCTACCAGT GATGAAACAG GTTGGTTTAT CGGTATGTGT TGCTGACGGC CATCCTTATG TTCAGCAAGG TGCCGATTTT GTTACTCATA TCAAGGGAGG CCACGGCGCC CTACGTGAGT TGACAGATCT ACTGCTTCTT AGCCAGAATA AGTTCGAAAC GGCTCATGGA ATGAGTATAT GA
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Protein sequence | MSHQGFYGPI EDTVWQKASK IKLLICDVDG VFSDGLVYMS NTGDELKTFH TRDGYGVRSL LTSDIPVAII TGRKSKIVED RMTALGITHI YQGVDDKLTP YQELLSLYKV TPEEVAYIGD DMVDLPVMKQ VGLSVCVADG HPYVQQGADF VTHIKGGHGA LRELTDLLLL SQNKFETAHG MSI
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