Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4232 |
Symbol | |
ID | 6118587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5134654 |
End bp | 5135436 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641635798 |
Product | hypothetical protein |
Protein accession | YP_001762583 |
Protein GI | 170728557 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.212693 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000290444 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACTTGC TAGATAGAGT TGCCAATTTG GGAAGAGCAG CAATTGAGCT GGTGATTGGA TTTGGAAGCG CAGGGTTAAT GTTGTGGGGG GCGATAGCCC GTAAACCTAG AGCCAAAGGT TTTCCCCTGT TCGTTAAACA ACTGTACGTT GTCGGCGTGC AATCTATGGT GCTGATATTT GTGTCGGGGC TTTTTATCGG CATGGTATTG GCGTTGCAAG GGTATAATAT TCTTGTGGGC TTTGGCACCG AAGAGAGCTT AGGGCCCATG GTGGCGTTGA GTCTGCTGCG TGAGTTAGGG CCTGTAGTGA CAGCCCTCTT GTTTGCTGGA AGAGCAGGTT CAGCATTGAC CGCTGAGATA GGTTTGATGA AGAGCACTGA GCAGCTTTCC AGTCTTGAGA TGATGGCAAT AGATCCCTTA AGACAGATCA TCGCCCCAAG GTTTTGGGCC GGGGTGGTAA GCCTTCCTCT GTTAGCCCTT ATCTTCACTG CGGTGGGGAT ATATGGTGGT CATATCGTGG GTGTCGAGTG GAAGGGGATA GACAGTGGTA GTTTCTGGTC TATTTTGCAG GCGTCTGTTG AGTGGCGACA AGATATTGTA AATTGTTTAA TTAAAAGTTT AGTGTTTGCG GTGGTGGTGA CCTGGATTGC GCTATACCGC GGTTATCAGG TGATCCCTAA TCCTGAAGGG ATCAGCAAGG CAACAACGCA AACCGTAGTT CAGTCTAGTC TGGCTGTGTT AGCACTGGAC TTCCTGCTTA CCGCACTGAT GTTTGGTCGT TAA
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Protein sequence | MNLLDRVANL GRAAIELVIG FGSAGLMLWG AIARKPRAKG FPLFVKQLYV VGVQSMVLIF VSGLFIGMVL ALQGYNILVG FGTEESLGPM VALSLLRELG PVVTALLFAG RAGSALTAEI GLMKSTEQLS SLEMMAIDPL RQIIAPRFWA GVVSLPLLAL IFTAVGIYGG HIVGVEWKGI DSGSFWSILQ ASVEWRQDIV NCLIKSLVFA VVVTWIALYR GYQVIPNPEG ISKATTQTVV QSSLAVLALD FLLTALMFGR
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