| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4226 |
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| Symbol | |
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| ID | 6118581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5130416 |
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| End bp | 5131501 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635792 |
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| Product | periplasmic serine protease DegS |
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| Protein accession | YP_001762577 |
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| Protein GI | 170728551 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000281438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000290444 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTATAA AAGACACACT CTTATACGTC GGTAAGGCAG TTACGTTCGG CCTAATTATG
GCGGCTGTCT TTCTGTTTGT TACCCCGCTT CTCACCGATA ACGGCTCTTC AAATCTATTT
TTTCAAAAAC GTGGTGATAA TGGCTTTGAG CTCTCATTCT CTAAAGCTGT TCGGCGCGCA
GCGCCAGCAG TAGTCAACAT CTATAGCTTA AGCGTTAATC GCAATCAGCC ACTCAACTCA
GGCTCACTTC AAGGGCTTGG GTCAGGTGTT ATCATGAGTA AAGAGGGCTA TATTTTGACT
AACTATCATG TTGTCAAAAA AGCCGATGAG ATTGTTGTAG CGCTTCAGGA TGGACGTAAA
TTTACCTCTG AAGTTGTCGG TTCAGATCCT GTCACCGACC TTGCCGTATT AAAAGTTGAG
GGTGACACCC TTCCAATAGT ACCGATTAAC TTAGGTGTAC CAGCTCAGGT TGGCGATGTG
GTGTTAGCGA TAGGCAACCC ATACAACTTA GGACAAACCA TTACCCAAGG CATTATCAGT
GCAACGGGAC GAAACGGTTT AAGCTCTGGC TATTTAGACT TTTTACAAAC CGATGCCGCC
ATTAATGCCG GTAACTCAGG TGGAGCACTT ATCGACACCA GTGGCCAGCT TATAGGTATC
AATACTGCCG CTTTCCAGAT TGGCGGAGAG GGAGGCGGAC ATGGAATTAA CTTTGCTATC
CCCATCAAGC TCGCCCACAG TATTATGGGG AAACTGATTA AAGATGGTCG AGTTATTCGT
GGTGCTCTGG GAATAACTGG TGAACCTGTT GGTCCTGTTA TCGCCCAGAT CCTTAATCTA
CCAGATCTAA CTGGTGTGGT GATAACCGGC GTTGATCCCC ATGGTCCAGC GGCTCAAGCT
CAGCTGCAAG CTAGAGATGT GATCACAAAG TTTGAGGGCG AAGCGGTTCC TGGCGTCGAG
ATGTTGATGG ATAGAATTGC TGAATCTACA CCGAATAAAC AGGTCACCAT GACCATTATT
CGTAAAGGAA AGGTATACGA TGTACCTGTC ACCATTGGTG AAAATGTCGT TGAAGAGACT
GAATAG
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| Protein sequence | MAIKDTLLYV GKAVTFGLIM AAVFLFVTPL LTDNGSSNLF FQKRGDNGFE LSFSKAVRRA
APAVVNIYSL SVNRNQPLNS GSLQGLGSGV IMSKEGYILT NYHVVKKADE IVVALQDGRK
FTSEVVGSDP VTDLAVLKVE GDTLPIVPIN LGVPAQVGDV VLAIGNPYNL GQTITQGIIS
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTSGQLIGI NTAAFQIGGE GGGHGINFAI
PIKLAHSIMG KLIKDGRVIR GALGITGEPV GPVIAQILNL PDLTGVVITG VDPHGPAAQA
QLQARDVITK FEGEAVPGVE MLMDRIAEST PNKQVTMTII RKGKVYDVPV TIGENVVEET
E
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