| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4225 |
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| Symbol | |
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| ID | 6118580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5128933 |
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| End bp | 5130285 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641635791 |
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| Product | protease Do |
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| Protein accession | YP_001762576 |
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| Protein GI | 170728550 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000611786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000372275 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACGA AATTAAGCTT ACTCTCTGCC GCATTACTAA CGGCATCCCT AACCTTAACG
CCAGCGATAA GCCAAGCCGC TATCCCTATG GCTGTTAATG GCGAGTCAAT TCCAAGCCTC
GCGCCTATGC TTGAGCGTAC AACTCCTGCG GTCGTCGCCG TTGCTGTTGA AGGCACCCAT
GTATCTAAGC AGAAACTTCC CGATGCTTTT CGCTATTTCT TCGGCCCTAA TGCACCACAA
GAGCAGGTGC AAGAGCGCCC ATTTAGAGGC TTAGGCTCAG GCGTGATAAT CGATGCTAAT
AAGGGCTATA TCGTCACGAA TAACCATGTG ATTGATGGCG CGGATGAGAT CTTAATCGGC
CTGCATGACG GTCGTGAGGT TGAAGCAAAA CTGATTGGTG CCGACGCTGA ATCTGATATT
GCACTGCTGC AGATAAAGGC TAAAAACTTA GTGGCGGTGA AGCGTGCCGA TTCTGATGAG
CTTAAAGTAG GTGACTTTGC TGTCGCTATC GGTAACCCCT TTGGCTTAGG TCAGACGGTC
ACATCAGGTA TTGTCAGTGC AATGGGCCGC AGTGGTCTGG GCATAGAGAT GCTTGAAAAC
TTTATTCAAA CCGACGCAGC TATCAATAGT GGTAACTCTG GTGGCGCACT CGTCAACCTT
AATGGCGACC TTATCGGTAT CAACACAGCC ATTGTTGCGC CTGGAGGCGG TAACGTAGGT
ATTGGATTTG CTATCCCAGC TAACATGGTC AACAACTTAG TCGATCAGAT CATTGAACAT
GGCGAAGTAC GCCGCGGCGT ATTAGGCGTA TCGGGCAGAG ATCTCACCAG CGAACTTGCT
CAAGCCTTCG GTCTCGATAC CCAACATGGC GGGTTTGTCG ATCAGGTGAT GGAAGACAGC
GCCGCTGAAG ATGCAGGTAT CAAAGCCGGC GACATTATCG TTAGTGTAAA CGGACGCAAG
ATCAAAAGCT TCCAGGAGCT TCGAGCAAAA GTCGCCACGA TGGGCGCTGG TGCTAAAGTC
AAATTTGGCT TAATCCGCGA TGGTGACTCC AAAACAGTAT CGGCCACATT AGGTGAAGCG
AGCCAAACCA CAGAAGCTTC GGCAGGCGCT GTTCATCCTA TGCTCGCAGG AGCTGCACTG
GAAAATGGAG ATGATGGTGT CGAAATCACC GATATTGCCC AAAATTCACC AGCCGCAGCT
AGCGGGCTGC GTAAAGGAGA CGTCATTGTC GGCGTAAACC GCAGCTCAAT AGATGATCTC
AATTCACTTA AAGCTAAGCT AAAGGAGCAG CAAGGTACGG TGGCGCTTAA GATACAAAGG
GGCCACAGTA GCCTTTTCTT AGTACTCAGA TAA
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| Protein sequence | MKTKLSLLSA ALLTASLTLT PAISQAAIPM AVNGESIPSL APMLERTTPA VVAVAVEGTH
VSKQKLPDAF RYFFGPNAPQ EQVQERPFRG LGSGVIIDAN KGYIVTNNHV IDGADEILIG
LHDGREVEAK LIGADAESDI ALLQIKAKNL VAVKRADSDE LKVGDFAVAI GNPFGLGQTV
TSGIVSAMGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL NGDLIGINTA IVAPGGGNVG
IGFAIPANMV NNLVDQIIEH GEVRRGVLGV SGRDLTSELA QAFGLDTQHG GFVDQVMEDS
AAEDAGIKAG DIIVSVNGRK IKSFQELRAK VATMGAGAKV KFGLIRDGDS KTVSATLGEA
SQTTEASAGA VHPMLAGAAL ENGDDGVEIT DIAQNSPAAA SGLRKGDVIV GVNRSSIDDL
NSLKAKLKEQ QGTVALKIQR GHSSLFLVLR
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