| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4182 |
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| Symbol | |
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| ID | 6118537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5084855 |
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| End bp | 5088067 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641635748 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001762533 |
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| Protein GI | 170728507 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCAAA CTATCCGCGC AATTTTACTG CTTACCTTTT TCCTCTTCAC CTTGAGTGCT
CACTCTGCAA ATCCTTTAGA TTTAAACAAA AAATTAGGGA TAAATCAGAC GCAAGGCGAA
AACCTAACCG CGGAAGAGAA ACTCGCTCAC ATAGAGCGCA ATACCAATGA ACTAGCCGAA
GTAGAGAAGA ACTATATTGA TTTAATCAAT AACTATGAGA GTCATAAGCT CAATATTGAA
CATCAACTAC AGGAAGCACA AGCTCCATTA ATCTGGTCTA AAAACCAGGG GTTAACACAA
CAAGCCTCAT TTGCTTACTT GCGCTTATCT GAATTAAAAG AGATAGAGGC TGAACTTCAC
GGCAAAATCA CCCTTCTATT AAAAGAGCAT AATCAACTTC CAAGTAAGAT CATCAGTGCA
AGAAAAGCAC TCACCGCCCA CAGCAAGAAT AAGATCAAAG AAACAGGCAA TATTGAAGAG
AAACTTCTGG TTGCGCAACG CCAACTCTAT ACTCAAAGCC TATCGACACT TGAAGCTGAG
CTTGCCAGTA GTCAAAAGCG AATCAACCTC AATCAGCAGC AGATGCAACT TGTTAGGAAA
CAGCTCTCTC AACAAGAGAG CCTCATTGAG TCGATTAATA GCGAGATGGC ACAACAACGC
CAACACAAAA CAGACTCAAC CATTGCCAAG AGTCTGATCG AAACGGCTAA CGAACAGAAC
CCACTGACAC AAGAGCTAAG CCAGAAAAAT CGTGAATACG CAGATGAGCT AAAAAAATTA
ACTCTCCTAA CTAATGAGGC CATTAAGCAG CAAGAGAAGG CTGAAAACCT TTACCAACAA
CAAGCAAAAC AACTAACAAA TATCCAGCAA CAGATCAGTT GGATTAAATT AAGCTCAGCC
TTTGGCGAAC GCTTTTTACA GATACTGCAA TCGCTCCCCT CTGTACCAGA TCAAGAGAAG
CTACAAACTA AAATAGCCAA TAGCAGACTG ATAAAATATC AATTAGAGCA AGATCAAACA
TTAAATGGCC AACAGCTACA GTCAATAGGC TCCTTTACTC TCATTCAGAA TCAGTTACTT
AATTCACAAC ATGATCTATT GGTGCAACTG CTTCAAGGTT ACGATCTCTA TCTGAGTGAG
CTTGCCGATC TTAGAGTTAT TTATGAGCAA CTAACTCAGC AAAATTTAAC CATAAAAAGT
ACTCTTAATG AGCACCTATT TTGGGTCCCT AATGCAAACT CAATAGGCAA GTTATGGTTC
ACTGATCTGC TGCAAAGCAC TCAATGGTTG ATTGCTCAAC AGCCATTAAC TCAAGTATCA
GCCTCGATCA GTACCCAAAG TACCCTATGG TCATGGTGGC TTATTCTTTT AATTGTTAGC
TTAATTGCTC AAGACATTCT GACACCCAAG TTTAATAAAA CCTTAGAGCA AGATGCAGCC
TTTGTGGGGA ACGTGACTCA AGATAGCTTT TTCTACACTT TAAGAGCACT CGTTAATACC
TTTATCTACA GTATCTTTAA GCCATCTCCC ATTGTACTCG CTGGTATCAT CATGCTGAAG
TCAGAGCAAA ATATGGTATC AGCAATTGGC ATGGGGGTCT TAGTCATCGG CTTAGTCTAT
CTGCTATATC GTTTCTCTTA CTTACTTGCA CTCAATAATG GCTTATTAAT TAGTCACTTT
AAAGGTCATG AAGCGCTCAT ACGTAAGGGG CAGCTCAAGC TAAAGGCGTT TACACTCACC
ACGATTCCTT TCTTCGGAAT TATGGGAGTC ACTGAGGTTA TCAATAACTC AGTCTTGAGA
AACAGCATAG GAAGAGGCGC CTTTATTATA TTCTGTATCT TACTGTTTAT GTTCTATAAA
GAGATACTGT CAATTTCCAA ACGTGAATAT CATGCCCATC AGGATGGCAA GAATAAGAAA
CTATTACAGC GGTTGTTATG GGCAATTCTT CTACTCGTTC CGCCTGTTTG TGCCGTTTTA
GCTTTCAAGG GGTACTACTA CACAGCCTTT CAAATGCTGC TGCAGTTACA GATCTCACTC
CTGCTCTCTC TCGGCTTCAT GTTGCTTTAC CAGTTAACTA AACGCTGGAT GTTAATCGAA
CGCCGGCGCA TTGCATTCGA TCGCGCTAAA GCTCGACGAG CAGAGATACT GTCACAGCGA
GAAAGGGGGG AAGAAACACA AAGCAGCAGT GATCCTTTAG ATACCTATGA GGAGCCTCAG
GTCGATTTAG AGACAATTTC AAGCCAATCC CTTGGTTTGG TTCGTTCCTT GTTGATTTTA
GCCTTCCTGG TGAGCTTAGT GGGCCTATGG ACTCAAACTC ATACAGCATT GTTCTCTTTA
CTCGATGGGA TCACTCTCTG GACCAGTAAT ACAACTATTA ATGGCATAGA ACAACCTCTA
CCAATAACCC TTAAATCTCT GCTGCTAGGA CTGATAATCG TCGGCTTCTC ACTCATGATA
GCCACCAATT TACCCGGCCT CATAGAGTTA ACCATTTTAC AGCGGCTGGA TCTGACCCAA
GGAACTGGCT TTGCTATCAC CACGGTCAGC CGCTATTTAG TTATCTTCTT TGGTATTTTA
AGTGGCTTCT CCACCTTAGG AATGGAGTGG TCGAAGCTTC AATGGCTCAT TGCTGCGCTC
TCTCTTGGCT TAGGTTTTGG TCTACAGGAG ATCTTTGCCA ACTTTATCTC CGGTCTGATA
ATTCTATTTG AAAAGCCAGT ACGTATTGGC GATACCGTCA CTATTAGGGA TCTCACCGGA
ACCGTAAGTA AAATTCAGAT CCGTGCAACA ACCATTATCG ATTGGGATAG AAAGGAGATA
ATTATCCCCA ATAAGGCGTT TATTACCGAG CAGTTGATTA ACTGGTCTCT CTCCGATCCT
ATAACTCGAG TGATTGTTTA TGTCTCAGTA GCTCGAGATT CTGATCCCGC TCGTGTTGAA
GCCTCGCTTT ACCAAGCTGT CAAAGAGTGC GATGAGGCTT TGGAGATCCC AGAGCCTGAA
GTCTGGTTTG CTGGCTTTGG TAAACACACC CAAGATTATG AAGTTCGAGC GTACGCTAAA
GATATGAATA CCCGATGGCC ACTTCGTCAT AAACTCCATA AAGAGATCAG TAAAAAACTG
AGGGAAAATA ATCTGGAATT AGCCTTCCCA CAACTGGAAG TTCATATCAG CAACACCCAC
AATAAAGACA CTCAAGGACT GATAAGAACC TAA
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| Protein sequence | MFQTIRAILL LTFFLFTLSA HSANPLDLNK KLGINQTQGE NLTAEEKLAH IERNTNELAE
VEKNYIDLIN NYESHKLNIE HQLQEAQAPL IWSKNQGLTQ QASFAYLRLS ELKEIEAELH
GKITLLLKEH NQLPSKIISA RKALTAHSKN KIKETGNIEE KLLVAQRQLY TQSLSTLEAE
LASSQKRINL NQQQMQLVRK QLSQQESLIE SINSEMAQQR QHKTDSTIAK SLIETANEQN
PLTQELSQKN REYADELKKL TLLTNEAIKQ QEKAENLYQQ QAKQLTNIQQ QISWIKLSSA
FGERFLQILQ SLPSVPDQEK LQTKIANSRL IKYQLEQDQT LNGQQLQSIG SFTLIQNQLL
NSQHDLLVQL LQGYDLYLSE LADLRVIYEQ LTQQNLTIKS TLNEHLFWVP NANSIGKLWF
TDLLQSTQWL IAQQPLTQVS ASISTQSTLW SWWLILLIVS LIAQDILTPK FNKTLEQDAA
FVGNVTQDSF FYTLRALVNT FIYSIFKPSP IVLAGIIMLK SEQNMVSAIG MGVLVIGLVY
LLYRFSYLLA LNNGLLISHF KGHEALIRKG QLKLKAFTLT TIPFFGIMGV TEVINNSVLR
NSIGRGAFII FCILLFMFYK EILSISKREY HAHQDGKNKK LLQRLLWAIL LLVPPVCAVL
AFKGYYYTAF QMLLQLQISL LLSLGFMLLY QLTKRWMLIE RRRIAFDRAK ARRAEILSQR
ERGEETQSSS DPLDTYEEPQ VDLETISSQS LGLVRSLLIL AFLVSLVGLW TQTHTALFSL
LDGITLWTSN TTINGIEQPL PITLKSLLLG LIIVGFSLMI ATNLPGLIEL TILQRLDLTQ
GTGFAITTVS RYLVIFFGIL SGFSTLGMEW SKLQWLIAAL SLGLGFGLQE IFANFISGLI
ILFEKPVRIG DTVTIRDLTG TVSKIQIRAT TIIDWDRKEI IIPNKAFITE QLINWSLSDP
ITRVIVYVSV ARDSDPARVE ASLYQAVKEC DEALEIPEPE VWFAGFGKHT QDYEVRAYAK
DMNTRWPLRH KLHKEISKKL RENNLELAFP QLEVHISNTH NKDTQGLIRT
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