Gene Swoo_4173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4173 
Symbol 
ID6118524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5075520 
End bp5076839 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content44% 
IMG OID641635735 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001762524 
Protein GI170728498 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAA TAGCGTCGTT TTTACAATTT TTTCTATTGT CGGTGACCTT GTGCTCATCT 
TTCTTTGTCC ATAGTGCTAA TAAACTGGAT GGAGTGAGAA TTTGGGCTGC ACCTGAGTCG
ACTCGAGTCG TTTTTGACCT GAATAAGGCT CCTGATTTCA GTTATTTCAC GTTAACTGGT
CCCTATCGAC TTGTTGTTGA CCTGAAGGGG ACCTCCACCT CAGTTAATCT CAGCAAACTT
GCAAATAATA GTAAATTAGT CAAAAGAGTT CGCATTAGTA AGCCACCCTC GAAGGGCACT
TTAAGGCTGG TTATTGATCT GACAAAGCCT GTTAAATCAA ACCTGTTTTC TCTGCCTCCA
ACGGCCCCTT ATGGTAATAG GTTAGTTGTT GATCTTGATG ATAGCGGCTC AAAGAAGGTA
GTTCAGACTA GTCAGCCTAA AGCCAAGCTC AGAGATGTAG TGGTTGCCAT TGATGCGGGT
CATGGTGGTG ATGATCCTGG ATCAATTGGA CCTTCGGGAA TTTATGAGAA AAAAGTGGTG
TTAGAGATCG CTAAGAAGGT CGAGGCGAAA ATCAATGCTA CGCCGGGTAT GAGGGCTGTA
ATGACGCGTA CCGGAGATTA CTTCGTTAAT CTTAATAAAC GTTCTGAAAT CGCCCGTACC
AGTAAAGCCG ATCTACTTGT GTCTATTCAC GCGGATGCCT TCACTTCGCC TCAACCTAGA
GGAGCTTCTG TGTGGGTTTT GTCTATGAGG CGTGCTAACA GTGAGATCGG TCGTTGGCTT
GAGCATAAAG AGAAGCATTC AGAGTTGCTT GGTGGCGCAG GTGAGATAAT CCAGAATACG
GATAACGAGC AATATTTAGC GATGACGCTG CTCGACATGT CCATGGATCG CTCTATGGCG
ATCAGCCACA ATATTGCTGA TGATGTACTG TCAAATTTAG GAAGAGTGAC CAAGTTGCAT
AAACATAAGC CGGAGTCGGC GAGTTTTGCG GTATTGAAAT CTCCTGATAT TCCCTCAATT
TTGGTCGAAA CAGGATTTAT TTCGAACCAC AAAGAGGAGC GGTTACTCTC GCAGCGAGAG
CATCAAAATA ATATTGCTAA GGCGGTACAT AAAGGTGTGC TGAAATATTT TGAGGCTAAC
CCGCCGGTTA ACTCCTTGAT GGCCAGTAAG GGTTCGTTTA AGCATAATGT CCGTAAAGGT
GAGTCACTAT CTGTGATAGC GCATAAATAT CAAGTGTCGA TTGCCAGTAT AAAACGGGCT
AATGGCTTAA AATCTAATAC CTTAAGAATA GGCCAAAAGT TGGTTATTCC TAGGGCGTAG
 
Protein sequence
MIKIASFLQF FLLSVTLCSS FFVHSANKLD GVRIWAAPES TRVVFDLNKA PDFSYFTLTG 
PYRLVVDLKG TSTSVNLSKL ANNSKLVKRV RISKPPSKGT LRLVIDLTKP VKSNLFSLPP
TAPYGNRLVV DLDDSGSKKV VQTSQPKAKL RDVVVAIDAG HGGDDPGSIG PSGIYEKKVV
LEIAKKVEAK INATPGMRAV MTRTGDYFVN LNKRSEIART SKADLLVSIH ADAFTSPQPR
GASVWVLSMR RANSEIGRWL EHKEKHSELL GGAGEIIQNT DNEQYLAMTL LDMSMDRSMA
ISHNIADDVL SNLGRVTKLH KHKPESASFA VLKSPDIPSI LVETGFISNH KEERLLSQRE
HQNNIAKAVH KGVLKYFEAN PPVNSLMASK GSFKHNVRKG ESLSVIAHKY QVSIASIKRA
NGLKSNTLRI GQKLVIPRA