| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4170 |
|---|
| Symbol | |
|---|
| ID | 6118521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5072314 |
|---|
| End bp | 5072598 |
|---|
| Gene Length | 285 bp |
|---|
| Protein Length | 94 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641635732 |
|---|
| Product | RNA chaperone Hfq |
|---|
| Protein accession | YP_001762521 |
|---|
| Protein GI | 170728495 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0476291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGG GGCAATCTTT ACAAGACCCG TTTTTGAACG CACTTCGCCG TGAGCGCGTT
CCTGTTTCTA TTTATCTTGT TAATGGCATC AAACTACAAG GACAGGTTGA GTCATTTGAT
CAATTTGTTA TTTTGCTTAA AAACACGGTT AGTCAGATGG TTTACAAGCA CGCAATTTCA
ACGGTTGTGC CAGCTCGTCC ATTTAACGTA AGTGCACATC ATTCATCACC TGCGCCAACA
CCAGCTGGTG GCTTTAATGG TCAGAATGAT GAGACTAGTG AGTAA
|
|---|
| Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS
TVVPARPFNV SAHHSSPAPT PAGGFNGQND ETSE
|
|---|
| |