| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4144 |
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| Symbol | |
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| ID | 6118494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5040468 |
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| End bp | 5041565 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635705 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001762495 |
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| Protein GI | 170728469 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.473768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCATT CCCAATATCT TACACTCAAG CTGCTCTTTG CAACCTTGCT ACTTTCCGCT
TGTAACAATC AGCCAAAGCT CAACACAATT GCCGACCCTG TTGTCACTAT GATGACAATC
AACGAAGTCG CCCCGTCCCC CCGAATGCAG TTTCCCGCCG TTGCGGCAGC TGCAGACAGA
TCTGAGCTGG CCTTTAGAGT CTCTGGGGAG ATAACCCAAA TTAACGTCAA ACCCGGAGAT
ATGGTTAAGA AAGATCAAGT GCTGGCATCT TTAGATACAA CCGATTACCA ACTCTCACTC
GATGATGCAA AAACCCGTTA TAAACTAGCT CAAAGTCAAT TCAGCCGCGC CGCTAAATTA
GTAAAAACAG GCTCATTGGC AAAATCACAA TATGATGAGC TAAAAGCTCA GCGAGATATT
GCCAAGGCAG ATCATGATCT AGCCGCCCTT AAATTGAGCT ATACCAAACT GTTAGCTCCA
TTCGACGGCG TAGTATCTCG AGTCCCAGCC TTAGCTTTCG AAGTCGTTGG AGTAGGCCAA
AGCATCATGA ATATTCACAA CATCTCCGAT GTGGATATCA AGATTCAGGC AGCAGATATC
ATCTATGTTA ATCACAGTAA CCGAGAGTCA GAGGAAACCT TAGCGGAGGT CGACCCCCGT
GTCGTACTAG ATGATGGCAA AGAGTACCGT CTAACAATGA AGGAGTTCAC CGTAGAGCCA
GATCCCGTAT CTGGTGCATT TATGGTGACG TTAACCATGC CAATGCCCAA AGACAGAATC
ATTCTTGATG GCATGAGCGT AGATGTGAAC GCCAGTGGTG AAGGTTTACT TGCCTACAAC
GCAGGAGCGA TGGAGATCCC AATTGAAGCA GTATTTAATG CCGACGGTGA TTCTCTCGAT
GCAAGTGAGC AATATGTCTG GCTCTTAGAT GATGAGAATA GAGTTCATAA ACAAAAAATA
GAGGTAGAGA AACTGACACC AACAGGCATT AGAGTCACCA ATGGGATCGC CAAGGGCGAG
CGTTTGGTTA CCTCTGGAGT CAACAAACTG GTCGATGGAC AGCTGGTTAT CATCAAGGGC
GAGGAAAATA GATCATGA
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| Protein sequence | MKHSQYLTLK LLFATLLLSA CNNQPKLNTI ADPVVTMMTI NEVAPSPRMQ FPAVAAAADR
SELAFRVSGE ITQINVKPGD MVKKDQVLAS LDTTDYQLSL DDAKTRYKLA QSQFSRAAKL
VKTGSLAKSQ YDELKAQRDI AKADHDLAAL KLSYTKLLAP FDGVVSRVPA LAFEVVGVGQ
SIMNIHNISD VDIKIQAADI IYVNHSNRES EETLAEVDPR VVLDDGKEYR LTMKEFTVEP
DPVSGAFMVT LTMPMPKDRI ILDGMSVDVN ASGEGLLAYN AGAMEIPIEA VFNADGDSLD
ASEQYVWLLD DENRVHKQKI EVEKLTPTGI RVTNGIAKGE RLVTSGVNKL VDGQLVIIKG
EENRS
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