| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4143 |
|---|
| Symbol | |
|---|
| ID | 6118493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5039440 |
|---|
| End bp | 5040471 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635704 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001762494 |
|---|
| Protein GI | 170728468 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.478516 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAATT CAATCTTAAT CGGATGCGGT GTTCTTGTTG CTGCATGCGG TGACAAAGCT
CCCGACATCC CCCCTCCTGA ATCTCGGCCA GCAAAATTAA TGACGGTAAC AGTCAGTGGT
GAAGCCGAAA AACGTAGCTT TCCTGCCTTG GTCGTCGCCG ACGACAGTGC CGTACTGACC
TTCAGAGTTC CTGGGCAGTT AAAACAGATG CAGGTAAAAG CTGGTATGCA GGTAACAGCA
GGCCAAACCT TAGCGGTGCT AGATCAGCAG GAGCTCAAAC TGCAACTCGC CCAAGCTCAA
GCCAGCTATG ATCTGGCTAA AGTTCAATTT GAGCGTACTG CTGGTTTACG CAAAGATTTT
GTCGTTTCTG AGCAAGATTA TGAGCAAGCT GAATCTAAAC TCAATGAGGC GATCGCTAAC
CGAGATCAAG CCTTTGCAAA CCTTGGCTAT GCCACCTTAC ATGCTCCCTA TGACGGTGCA
ATCTCATTAA GACATAAAGA GAACCACGAG TATGTTGCAG CTAATGAACC TGTAATGAAC
ATACAGACCA GTGACATAGT CAACGTCTCT TTCCAACTGC CAGAGCGGCT AGCAGGGCAG
ATAAATCGTA AGCAACAAAC CGCCATTGCC GATATTGTTT TTGATACCTA TCCGGATAAG
ACCTTCAGCG CCATGCTTAA GCAGATAGAT ACTGAGGCCG ATCGAAAAAC TGGTAGCTAT
AAGGTCACAC TCACACTAAA ACGTCCTGAA AATGTGAATG TCCTCCCTGG CATGTCCACA
ACCGTTATTG TGCCTATCAA AGCTGCAGTT AGCTCTCTCA TCCCTAAATC GGCTCTACTC
AAAGGAAATA CCGATCAACA TAGAGTATGG CAAGTAGGTG AAGATGGACG AGTTAGCGAG
TCATTAATCA CCTTGAATGA CGACCGCTTA ATAGGCGGAT TACAAGATGG TGATGTGATC
GTACTTTCAG GTGTTGAGTA CCTCAATGAG GGCGATAAAG TCACTCCTTG GGTTAAGGAG
CGAGGACTAT GA
|
|---|
| Protein sequence | MRNSILIGCG VLVAACGDKA PDIPPPESRP AKLMTVTVSG EAEKRSFPAL VVADDSAVLT
FRVPGQLKQM QVKAGMQVTA GQTLAVLDQQ ELKLQLAQAQ ASYDLAKVQF ERTAGLRKDF
VVSEQDYEQA ESKLNEAIAN RDQAFANLGY ATLHAPYDGA ISLRHKENHE YVAANEPVMN
IQTSDIVNVS FQLPERLAGQ INRKQQTAIA DIVFDTYPDK TFSAMLKQID TEADRKTGSY
KVTLTLKRPE NVNVLPGMST TVIVPIKAAV SSLIPKSALL KGNTDQHRVW QVGEDGRVSE
SLITLNDDRL IGGLQDGDVI VLSGVEYLNE GDKVTPWVKE RGL
|
|---|
| |