| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4137 |
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| Symbol | |
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| ID | 6118487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5030348 |
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| End bp | 5032828 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635698 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001762488 |
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| Protein GI | 170728462 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.153825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCGC CCGACGGTAG AACTTTTTTT GTTAGTCTAA AATGGAAGCT TTTGGTGGCT
GTCTTAATGA TGTTTACCAT CTTGGGAGGC ATATTAGGGG CATTTACCTT CCGCCAACTG
CTCAACCAGC AGAGTTACCT TCTTGAAACT CAAAGAAATC AATTATCTCA AAACCTTGAT
AGTGCTATCT CTCTTACCGT CGATAATTCA CTGATAGCAG CACAGCAGAT AGCCTTATTG
ATAAGTGAAG AGAGGAGCGT AACAACGGAT ATAAGCCAAT ATCAGAAGAT GCTGGATAAT
CGATGGCCTG ATATTCAGCT CTATTGGGAG TTAGGCTCTA TGCGTCTAAT GTCTCCCTCT
GGAGAGGTGT TAGCCCATGC AGGAAAAGTG ATTGATTCCG AAGACCTTCA ATGGTTTGAG
ACAAGTCCTG TTAGTGTCGA GCCACATTGG CGGATAGTTT GTCATCATGA ATGTGTTATT
CAAGTATTAG TGCCAAATTT AATTAATGGC GATCCCTTCT TGCTATTTTT GGAGTTAGAA
CTCACGGATA TTTTGTCAAT ATTTAGGGTT AATGAAACCT TTGAGCTAGC TGTGTTAGGC
CCCAAGTTAG ATGTTCCCGT AGGTCGTAAT TATTGGGCTA GAGAGCTATA TAGCTTAAGT
AATAAACGTA CTAGCCTTCC CCTATTAGAG CAAGCGGCTG AATATTTCTC ATGGGAACAC
ATTGCCAATA AAGGTGGGGT TTATGAAGTT AATAATGAGT ATTCCGCTAT CTGGATATTT
CCGTTAGCCC AGACCCCTAA TTCCCCCTCG ATACTGGTGA TCAATAATAT CAACAGTTGG
CAGCTACTCC TGAATGAATT TCAAGAGAGT ATGTTAGGCA CCTTGCTGAT ATCGCTGCTC
TTATCTGGTT TTTTAGTCAT ATTAGTGGCC TGGAGCCCAG TGGTTAGTTT AAGTCGACAT
GCCAGCATGT TGCCACTGCT TGCAGAACAT GATTTTGAGA TTTTGAAGCA ACAATCTCCT
AAAAGAGCAT CATTCTTTAT TGATGAGGTG GATCAGATAA ACAGCGCAAC TCATCAACTT
GCGGATAGAC TTCAGCATCT TGAGTTAGAA GTTGATGAGT ACACAGCCGA GTTAGAGAGA
CTGGCGATGC TAGATGCCCT GACAGGCCTT CCTAATAAAG CGATGTTGAT GCATGAGCTT
AATAAAACCA TCGCCTGTGT GGGCCGTATT CATGATCAAG TTGCTTTGAT GTATCTAGAT
TTAGATGAGT TTAAACGTAT TAATGACACC TTAGGTCATA CACAAGGTGA TGAGTTATTA
AAAATAGTGG CAACTAGGCT CAACAATAGT GTCAGAGCGA TGGACACGGT ATTTAGGCAA
GGAGGGGATG AGTTCCTTAT CTTGCTTAGA GGGATACGTT CAGATCAAGA TGTTCGCAAG
GTGATCCATA AGATATTTTC TGCATTGCAG CAGCCAGTCG CCTTAGGGAA TCATAAGTTA
ATCGTGACGA CCAGTATCGG TGTTGCTTAT TGCAAGAGTA TGAATGTTAG GGCGGACGAA
CTTATTAAGT ATGCTGATTT AGCCATGTAT CAGGCTAAAG ACGCTGGACG TAGTAATTAT
CGTGTCTTTA CTGAAGATAT GCTGCTTAAA GCGAACAACA AACTTATGAT TGAACAAGAT
ATAGGTGCGG CTATTGAGGA GAGACAGTTA TCTCTGTTTC TGCAACCTAT TGTTGGACTT
CCTGATGCAA AGCTTAAAGG TTTTGAAGCT CTTATTCGTT GGTTCCACCC TCAGCGGGGC
TTAATTATGC CGGGAGATTT TATACCGAAC ATTGAAAATA GTGAGGCGAT CATCCAAGTG
GGAAACTATG TGTTGGAGGA GGGGGGGGCT ATGTTATCCC GCCTACGAAA ACAGGGGTGG
AATGATCTTT ACCTTGCGGT GAACCTTTCT GCTAAGCACT ATATGGATCC AGGTTTAATC
CCCTTGGTTC AGCATATTTT GGCCAAGTAC GAACTTCCTC CACAAAGTCT GCTACTGGAA
GTGACGGAGG AGAGTGTGAT TGAGCAGGTG GATCTGGCTA TGTCATCGAT GAAGTCTCTG
AAGCAGTTAG GCGTGCGTAT CGCGATTGAC GATTTTGGTA CTGGTTACTC ATCTTTGAGC
TATCTGAAAC AACTTCCCTT CGATGTTTTA AAGATAGATA GGTGCTTCAC CTCAGAAGTA
CTCAATGAAA GTGTGGATTC ACATATTGTG AGTACGGTAA TCGATCTCGC CCATAACTTA
GGAAGGACTG TGGTTGCTGA GGGGATAGAG GTACAGGAGC AGGCTGATTG CCTAGCTGAG
ATGGGCTGTG AATTAGCACA GGGGTATCTC TACTCTAAAC CTTTGGATGA AGATAAGATT
TTTCAGATTT TGAACAGGAT TGAGACGAGT CGGGTGTGGC CTGCAGAGCA GATCCCGCAA
CTAGGTAAGC TGGGGAGCTA G
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| Protein sequence | MTAPDGRTFF VSLKWKLLVA VLMMFTILGG ILGAFTFRQL LNQQSYLLET QRNQLSQNLD
SAISLTVDNS LIAAQQIALL ISEERSVTTD ISQYQKMLDN RWPDIQLYWE LGSMRLMSPS
GEVLAHAGKV IDSEDLQWFE TSPVSVEPHW RIVCHHECVI QVLVPNLING DPFLLFLELE
LTDILSIFRV NETFELAVLG PKLDVPVGRN YWARELYSLS NKRTSLPLLE QAAEYFSWEH
IANKGGVYEV NNEYSAIWIF PLAQTPNSPS ILVINNINSW QLLLNEFQES MLGTLLISLL
LSGFLVILVA WSPVVSLSRH ASMLPLLAEH DFEILKQQSP KRASFFIDEV DQINSATHQL
ADRLQHLELE VDEYTAELER LAMLDALTGL PNKAMLMHEL NKTIACVGRI HDQVALMYLD
LDEFKRINDT LGHTQGDELL KIVATRLNNS VRAMDTVFRQ GGDEFLILLR GIRSDQDVRK
VIHKIFSALQ QPVALGNHKL IVTTSIGVAY CKSMNVRADE LIKYADLAMY QAKDAGRSNY
RVFTEDMLLK ANNKLMIEQD IGAAIEERQL SLFLQPIVGL PDAKLKGFEA LIRWFHPQRG
LIMPGDFIPN IENSEAIIQV GNYVLEEGGA MLSRLRKQGW NDLYLAVNLS AKHYMDPGLI
PLVQHILAKY ELPPQSLLLE VTEESVIEQV DLAMSSMKSL KQLGVRIAID DFGTGYSSLS
YLKQLPFDVL KIDRCFTSEV LNESVDSHIV STVIDLAHNL GRTVVAEGIE VQEQADCLAE
MGCELAQGYL YSKPLDEDKI FQILNRIETS RVWPAEQIPQ LGKLGS
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