| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4130 |
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| Symbol | |
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| ID | 6118480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5022573 |
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| End bp | 5023913 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635691 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001762481 |
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| Protein GI | 170728455 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00171809 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAACC TTCTGTTAGT CAGTCAACAC TATGATGATT GCTTGTATCA GAGTATCAAA
AGAGATGGAT ATCAGATCAC TCATTGTGAT TTTAAAGAGT TGGAAGGGAT TTGTGAAAGC
AATCAACATC TGGGAGTCAT AGATCTAAGA GGTTGTAGCG ATCTTATATT GATCGAGCGT
TTACTCGATG GGATCCACTC CCACATGCTA ATTGTAATTA TCGTCAATCG CCAACAGCTT
AAAAATACAG ATATCAAAAG AGTAATAGGT AAGTACGCTT GGGATTACCA TACTGAGCCT
ATAGATCACG GAAGATTTTT TAGGATGTTA GGTCATGCCT CCGGTCTTTC TACTCTGAAA
CGAATAAGCC AATCAAGTTT AAAATCAGAA AATGAATCTA TGTTGATCCA CTCTCCTGTT
ATGCAGGCTC TGGATGAGCA GATTAGTCGT GTCGCACCGA CCGATATTCC AGTTTTGATC
CGTGGCGAAA GTGGCACTGG TAAAGAGTTG GTCGCACTTA ACATTCACCA AGAGTCACGT
CGTTCTTCAG GGCCTTTTGT TGCCGTGAAT TGTGGCTCTA TGGTATCGGG GTTAGTGCAA
TCTGAACTTT TTGGTCATGC TAGGGGGGCT TTTACTGGCG CTGTGGCTGA GCGAAAAGGA
AAAATTGAGT TAGCAGATAC TGGCACACTC TTTCTTGATG AAATTGGCGA CCTTCCGTTG
GATCAGCAAG CTAATTTGCT ACGCTTTCTG CAAGAAGGTG TGTTCGACAA AGTAGGAGGC
ACTGGTGCTT GTAAAGCTAA TGTTCGTATT TTGGCTGCGA CTCATATTGA TCTCGATGTT
GCGATCTCGA AAGGGGAGTT TAGGTTAGAT CTCTACTATC GTCTTAATGG CGTTACGCTC
AATACTCCGA CTTTGCAACA GCGCAGTGAA GATATCCTCC CTTTAGCCAG ACAATTTGTT
GATGTGTTTG CTAGGGAGTT TGATTTTCCA GGTTGTCATC TGACCGATGA TGCATGCCGT
GCACTTCAAA GGCATGATTG GCCTGGTAAT GTGCGTGAAC TGATAAACCG AGTGAGACGT
GCTGTGGTAT TAAGCGATAA AGGTAGGGTA AATGCAGCTG CATTGGATCT ACTTAGCATT
AAAGAGGTAG AGCTGTTGCC ATTAAAGGTG TTGAAAAATC AAGTTGAGCG AACGGCAATT
ATTAATGCAA TGCAGTTTAG TAATGGCCAC GCAGAGCAGG CTGCCGTGCA CCTTCAGATC
TCTAGAGCTA CCTTGTACCG ACTATTGGAA AAACACGATA TTGACCAGTC AGAGGAGCTG
TGTCTAAAAA ATAAGAATTA A
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| Protein sequence | MKNLLLVSQH YDDCLYQSIK RDGYQITHCD FKELEGICES NQHLGVIDLR GCSDLILIER
LLDGIHSHML IVIIVNRQQL KNTDIKRVIG KYAWDYHTEP IDHGRFFRML GHASGLSTLK
RISQSSLKSE NESMLIHSPV MQALDEQISR VAPTDIPVLI RGESGTGKEL VALNIHQESR
RSSGPFVAVN CGSMVSGLVQ SELFGHARGA FTGAVAERKG KIELADTGTL FLDEIGDLPL
DQQANLLRFL QEGVFDKVGG TGACKANVRI LAATHIDLDV AISKGEFRLD LYYRLNGVTL
NTPTLQQRSE DILPLARQFV DVFAREFDFP GCHLTDDACR ALQRHDWPGN VRELINRVRR
AVVLSDKGRV NAAALDLLSI KEVELLPLKV LKNQVERTAI INAMQFSNGH AEQAAVHLQI
SRATLYRLLE KHDIDQSEEL CLKNKN
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