Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4122 |
Symbol | |
ID | 6118472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5010357 |
End bp | 5011736 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635683 |
Product | alpha-L-glutamate ligase |
Protein accession | YP_001762473 |
Protein GI | 170728447 |
COG category | [H] Coenzyme transport and metabolism [J] Translation, ribosomal structure and biogenesis [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [COG4067] Uncharacterized protein conserved in archaea |
TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000650409 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00401578 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAATA AAATCATTGT CGGTAGTGAA GAGTGGTGCG CTTTACCTGG TTTAGGTATT AAAGCGATTA AGGCCCGTGT CGATTCCGGA GCTAAAACAT CATCTATCCA CGCAATCAAT ATCTCAACCT CTAAGCGCGA AGATGGCACT TGGGTGAGTT ACGAAGTTCA CCCTCTACAG GGTGGCCGTA AAGTTGCCCT ACTGTGTGAG TCAAAACTTA TCGATCGTCG TGTGATCAAG AGTTCAAATG GCGAAACAGA AAAGCGCTAT GTTGTACGCG AACAGCTACA ACTTGGTGAG CAGAGTTGGG AGATTGAGCT GACTTTGACT AACCGTGCCA ACATGGGCTA TCGCATGTTG CTGGGTCGTG AAGCTATGGG CAGTAAGATC TTAGTCGATC CTTCGAGCAC TTGCTGTTTA GGTGAGATGA GCGACGATGA AGCTAAAGAG CTATATGGCC ATGTAGAGGT TCCTCGAAGT GGTCTTAAAA TAGGATTACT GGCAAGTAAT CCAAACTTAT ACAGTAACCA GCGCATTATT GAAGCTGGCC AGCAACGTGG CCACGAAATG TACTTCCTTA ATGTAAAGCA GTGCTATATG AAGTTAGATG CATCTCAACC TGAGGTGCAC TACCGTGATG GTCGGATCTT AAATGATCTT GATGCTGTTA TTCCACGTAT TCGTCCAAGT ATGACGTTTT ACGGCTGCGC ACTAACTCGT CACTTTGAGA GTTTAGGTGT GATGGCATTG AACACCTCTG AAGCGATCAC TCGCTCTAGA GATAAGCTGT TTTCTCTGCA GTTATTGCAG AAGAATAACT TAGATATCCC AACTAGCGGT TTTGCAAACT CACCAGCGGA CACAACCGAT CTGATTGATA TGGTTGGTGG GGCTCCGCTG ATTGTTAAGC TGCTTGAGGG AACTCAAGGT AAAGGTGTTG TGCTTGCTGA AACCCGAAAA GCGGCAGAGA GTGTGATCAA TGCATTTAAA TCTCTGAAGG CTAACCTGTT GGTTCAGGAG TTTATTAAGG AAGCACAAGG TAAAGATTTA CGCTGTTTTG TTATCGATGG CAAAATTGTT GCGTCGATTG AGCGTACTGC GGCGCCGGGT GAGTTTAGAG CTAATATCCA TCAAGGTGGC ACAGCTTCAT TGGTTCAGAT CTCTCCTGAG GAGAGAAAGC TTGCGATTAA AGCAGCTAAA ACCATGGGGT TAGAAGTTGC CGGTGTTGAT ATCATCCGCT CAAGTAAAGG TCCTTTGTTG CTAGAGATTA ACTCTTCACC TGGACTTGAA GGCATCGAGA CTGCAACGGG GATCGACGTT GCTTCAGCGA TGATCGACTC AATTGAGAAA AGATTGGGCT GGAAAAAAGA GACAGCTTAA
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Protein sequence | MSNKIIVGSE EWCALPGLGI KAIKARVDSG AKTSSIHAIN ISTSKREDGT WVSYEVHPLQ GGRKVALLCE SKLIDRRVIK SSNGETEKRY VVREQLQLGE QSWEIELTLT NRANMGYRML LGREAMGSKI LVDPSSTCCL GEMSDDEAKE LYGHVEVPRS GLKIGLLASN PNLYSNQRII EAGQQRGHEM YFLNVKQCYM KLDASQPEVH YRDGRILNDL DAVIPRIRPS MTFYGCALTR HFESLGVMAL NTSEAITRSR DKLFSLQLLQ KNNLDIPTSG FANSPADTTD LIDMVGGAPL IVKLLEGTQG KGVVLAETRK AAESVINAFK SLKANLLVQE FIKEAQGKDL RCFVIDGKIV ASIERTAAPG EFRANIHQGG TASLVQISPE ERKLAIKAAK TMGLEVAGVD IIRSSKGPLL LEINSSPGLE GIETATGIDV ASAMIDSIEK RLGWKKETA
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