| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4088 |
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| Symbol | metH |
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| ID | 6118438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4960016 |
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| End bp | 4963771 |
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| Gene Length | 3756 bp |
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| Protein Length | 1251 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641635649 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001762439 |
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| Protein GI | 170728413 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.611508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTG GAACCCTAAG AACCAAAAAC ATAAAAGCGA AAGGCCAACA ACTCGAGCAG
CAGCTAAAGC AGCAACTGAG CGATGGGATC CTTATCCTAG ATGGCGCCAT GGGCACCATG
ATCCAAGACT GCAAATTCGA AGAGGATGCC TTTCGTGGTG AGCAGTTTAA GGAGTGGCAT
TGCGATGTTA AGGGCAACAA CGACATGTTG GTGCTCACCC AGCCAGATGC GATTAAACAG
ATCCATAAAG ATTACCTACT GGCTGGTGCC GATATTATCG AGACCAACAC CTTCAACGCG
ACTCGTATCG CCATGGCCGA TTACGACATG CAGGAGCATT CGGCCTCGAT CAACCTTGAG
GGTGCTCGCT TAGCCCGCGC CGCTGCCGAT GAAGTCGAAC AAGAGACTGG CCGAAGCTGT
TATGTGGCGG GTGTTCTCGG ACCAACCAAC CGAACCTGTT CAATCAGTCC CGATGTCAAC
GACCCTGGCT ACCGTAATGT TAGCTTCGAT GAATTAGTCG AAGCCTATAT TGAGTCTATC
AATGCATTAG TCCAAGGCGG CGCCGATATC CTCATGGTGG AAACCATCTT CGATACGCTC
AACGCCAAAG CGGCACTGTT TGCTATTGAA ACCGTATTTG ATGAGCAAGA TTTCCGTTTG
CCTATCATGA TCTCAGGCAC CATAACCGAT GCCTCAGGCC GTACCCTTAC CGGACAAACC
ACCGAAGCCT TCTACAACTC ATTACGTCAC GTTAAGCCAC TCTCTATCGG CCTTAACTGT
GCATTAGGAC CAAAAGAGCT GCGTCCATAT GTAGAAGAGT TATCAAAAAT TTCTGAGTGT
TTCGTCTCGG CGCACCCCAA TGCGGGGCTG CCAAATGAGT TTGGTGGTTA TGATGAAACC
CCCAAACAGA TGGCCGATAT CATTGGCGAG TGGGCCGAGG AGGGCTTCCT CAATATTATC
GGTGGCTGTT GTGGTACTAC ACCCGATCAC ATCCGCGTCA TTCGTGAAGC TGTGATTAAG
CACCCGGCGC GTAAACTGCC TGATATTCCA GTGGCTTGTC GTCTCTCAGG CCTTGAGCCT
CTGACCATAG ATGAGAACTC ACTCTTCCTA AACGTAGGTG AGCGTACCAA CGTCACTGGC
TCTGCCAAGT TTCTGCGCCT GATTAAAACT GGCGAATATG AAGAAGCACT GAGTGTCGCC
CGCGATCAAG TGGAAAACGG CGCTCAGATC ATCGATATCA ATATGGATGA GGGGATGCTC
GACGGCGTCG AGGTGATGCA CAAATTCCTC AATCTTATCG CTTCAGAGCC AGATATCTCT
CGCGTACCGA TTATGATCGA CTCCTCCAAA TGGGAGGTGA TCGAAGCCGG TCTTAAATGC
ATTCAAGGCA AAGGGATCGT TAACTCCATC TCCCTAAAAG AGGGCGAAGA GAAGTTTATT
GAGCAAGCCA AACTGGTTAA ACGATATGGC GCTGCTGCCA TTATCATGGC CTTCGATGAA
ACAGGCCAAG CGGACACCGA GGCGCGCAAA GTCGAGATCT GTACTCGCGC CTATAACGTC
TTAGTCGACA AGGTTGGCTT CCCACCAGAA GATATTATCT TTGACCCCAA CATCTTCGCC
ATCGCCACCG GTATCGAGGA GCATGATAAC TACGCCGTCG ATTTTATCGA GGCAACCCGC
GAGATAAAGC GCACTCTACC CCACGCAATG ATCTCGGGCG GTGTCTCCAA TGTCTCCTTC
TCATTTCGCG GTAATAACCC GGTGCGAGAA GCAATTCACG CCGTGTTCCT CTATCACGCG
ATTCAAGCTG GCATGGACAT GGGTATCGTT AACGCTGGGC AGCTGGCCAT TTATGACGAT
ATCGACCCAG AACTCAAAGA GAAAGTTGAA GCCATAGTAC AAAACCTCCC CTGCAGCGCA
GTGGATAAAA ACGGTGAAGC AACCAATAAC ACCGAACAGC TACTAGAGGT CGCGGAAAAA
TTCCGTGGCG ATGGGGCTCA GGCTGGTAAA AAAGAGGATC TCGAGTGGCG CACTAAACCG
GTTAACGAGC GTTTAGCTCA CGCACTGGTC AAGGGCATTA CCGACTATAT CGATGAGGAT
ACCGAAGAGG CGCGTACAGC GGCCACCAGA CCACTGGATG TCATTGAAGG TCCGCTGATG
GACGGCATGA ACATCGTTGG CGATCTCTTT GGCTCCGGCA AGATGTTCCT ACCACAGGTG
GTAAAATCCG CCCGCGTGAT GAAAAAAGCT GTGGCTTACC TCAACCCTTA CATCGAGCTT
GAAAAGGTCG CCGGTCAATC TAACGGTAAG ATCTTAATGG TCACGGTAAA AGGTGACGTA
CACGATATTG GCAAGAACAT TGTTGGCGTG GTACTGGCCT GTAACGGCTA TGAGGTGATT
GATCTCGGTG TGATGGTCCC TGTAGAGAAA ATCATTGAGG TCGCCAAAGC GGAGAATGTC
GATATTATCG GGATGTCAGG ACTTATCACC CCGAGTCTAG ACGAGATGGT GCATAACGTT
AAAAGCTTCC ATAAAGCGGG CCTCACCATC CCTTCGATTA TTGGTGGTGC CACCTGCTCT
AAAATTCACA CCGCAGTGAA AATAGCCCCA CATGCACCAA CGGGCGCCAT CTATATTGCC
GATGCTTCGC GCGCCGTCCC TATGGTTTCT AAGCTCATTA ACGATGACAC TCGTCAAGCC
ACCATAGATG AAGCCTATAA CGAATATGAT GTGATGCGTG AAAAACGCCT GTCACAGGCT
AAACGTAAAA TGATCACCTC AATCGAAGCT GCCCGTGAAA ATCGTTGTCA GCACGACTGG
GAGAGCTACA CCCCATTTGT GCCTAACCAA CTAGGTCGTC AGGTATTCGA TGATTATCCA
CTAGAAGATC TCGTCGATCG CATCGACTGG ACACCGTTTT TCCGCAGCTG GGAGCTGCAC
GGTCACTTCC CTAAGATTTT AGATGATGAA GTCGTGGGTG AAGAGGCACG TAAACTGTTT
AGCGACGGTA AGGCCATGCT TAAGAAGATC ATCGATGAGA AGTGGCTCAC CGCCAAAGGC
GTTATCGGTC TGTTCCCTGC AAATACCGTG GGACATGACG ACATAGAGCT TTACACTGAT
GAAAGCCGTA GTGAACTTGA GATGACGACC CATCATCTGC GGATGCAGAT TGAACGTGTG
GGCAATGACA ACTTCTGCCT CGCCGACTTT GTCGCCCCTA AAGACTCTGG CGTAGCCGAT
TACATGGGTG GCTTTGCAGT TACCGCAGGT CACGGTATCG ACGAGCATGT TGAGCGTTTC
GAGGCTGACC ACGATGACTA CAGCGCCATT ATGCTCAAGT GTCTGGCAGA CCGCTTGGCT
GAAGCCTTCG CCGAACGTAT GCATGAGCGT GTCCGTAAAG AGTTCTGGGG TTATGCTGCC
GATGAGGTAC TCGATAACGA AGCGCTTATT CGTGAAAAAT ACAAAGGGAT CCGCCCCGCA
CCGGGTTACC CAGCTTGTCC CGATCACACC GAGAAAGGCT TGCTATGGGA TCTACTAAAA
CCCGATGAAA CTATCGGTCT TAACATCACT GAAAGCTTTG CTATGTTCCC CACCGCCGCA
GTATCAGGCT GGTATTTTGC CCATCCTAAA TCACGCTACT TTGGTGTGAC CAATATTGGA
CGCGATCAGG TAGAAGATTA TGCAGCGCGT AAGGGGATGA GTGTGGAGGA GGTTGAGAGG
TGGCTAGCAC CAGTGTTGGA TTATGATCCG GAGTAA
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| Protein sequence | MTTGTLRTKN IKAKGQQLEQ QLKQQLSDGI LILDGAMGTM IQDCKFEEDA FRGEQFKEWH
CDVKGNNDML VLTQPDAIKQ IHKDYLLAGA DIIETNTFNA TRIAMADYDM QEHSASINLE
GARLARAAAD EVEQETGRSC YVAGVLGPTN RTCSISPDVN DPGYRNVSFD ELVEAYIESI
NALVQGGADI LMVETIFDTL NAKAALFAIE TVFDEQDFRL PIMISGTITD ASGRTLTGQT
TEAFYNSLRH VKPLSIGLNC ALGPKELRPY VEELSKISEC FVSAHPNAGL PNEFGGYDET
PKQMADIIGE WAEEGFLNII GGCCGTTPDH IRVIREAVIK HPARKLPDIP VACRLSGLEP
LTIDENSLFL NVGERTNVTG SAKFLRLIKT GEYEEALSVA RDQVENGAQI IDINMDEGML
DGVEVMHKFL NLIASEPDIS RVPIMIDSSK WEVIEAGLKC IQGKGIVNSI SLKEGEEKFI
EQAKLVKRYG AAAIIMAFDE TGQADTEARK VEICTRAYNV LVDKVGFPPE DIIFDPNIFA
IATGIEEHDN YAVDFIEATR EIKRTLPHAM ISGGVSNVSF SFRGNNPVRE AIHAVFLYHA
IQAGMDMGIV NAGQLAIYDD IDPELKEKVE AIVQNLPCSA VDKNGEATNN TEQLLEVAEK
FRGDGAQAGK KEDLEWRTKP VNERLAHALV KGITDYIDED TEEARTAATR PLDVIEGPLM
DGMNIVGDLF GSGKMFLPQV VKSARVMKKA VAYLNPYIEL EKVAGQSNGK ILMVTVKGDV
HDIGKNIVGV VLACNGYEVI DLGVMVPVEK IIEVAKAENV DIIGMSGLIT PSLDEMVHNV
KSFHKAGLTI PSIIGGATCS KIHTAVKIAP HAPTGAIYIA DASRAVPMVS KLINDDTRQA
TIDEAYNEYD VMREKRLSQA KRKMITSIEA ARENRCQHDW ESYTPFVPNQ LGRQVFDDYP
LEDLVDRIDW TPFFRSWELH GHFPKILDDE VVGEEARKLF SDGKAMLKKI IDEKWLTAKG
VIGLFPANTV GHDDIELYTD ESRSELEMTT HHLRMQIERV GNDNFCLADF VAPKDSGVAD
YMGGFAVTAG HGIDEHVERF EADHDDYSAI MLKCLADRLA EAFAERMHER VRKEFWGYAA
DEVLDNEALI REKYKGIRPA PGYPACPDHT EKGLLWDLLK PDETIGLNIT ESFAMFPTAA
VSGWYFAHPK SRYFGVTNIG RDQVEDYAAR KGMSVEEVER WLAPVLDYDP E
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