Gene Swoo_4072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4072 
Symbol 
ID6118422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4943993 
End bp4944754 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content47% 
IMG OID641635633 
ProductABC transporter related 
Protein accessionYP_001762423 
Protein GI170728397 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATCGA TGAAAAGTAT CAGTAAAGTA TTTAAAACGG ATTTAGTAGA GACCCATGCG 
CTACGAGATT TTAATTTAGA GGTGAATGAG GGAGAGTTTG TGGCGGTAAC TGGGCCATCG
GGATCAGGTA AAACGACCTT TCTCAATATT GCAGGTCTGC TTGAAGGTTT TACCCATGGT
GATTACTTTC TTGATGGCGT GAATATCTCT AACTTGAGTG ATAACAAGAG TGCAGCGATT
CGAAACGAGA AGATAGGTTT TATCTTTCAG GGCTTTAACT TAATTCCTGA TCTAAATCTT
GCTGAGAATG TTGAGGTACC ACTGCGCTAT CGTGGCTTTA ATGCCGCCGA GCGTAAACGT
CGTGTGCAAC ATGCACTGGA GCAGGTTGGA CTGGCTGCAC GAATGAAGCA TCTGCCGTCA
CAACTTTCCG GTGGTCAGCA GCAGCGTGTG GCTATTGCTC GTGCGCTGGC GGGAGAGCCA
AGGTTTCTAT TGGCCGATGA GCCAACGGGT AACTTAGACA GCATGATGGC ACGTCAGGTG
ATGGAGTTGC TTGAGGAGAT CAATAAGGCG GGAACCACGA TTATTATGGT AACCCATGAC
CCTGAACTGG CTCGTCGTGC GCAGCGAAAC ATCCAGATTG TCGATGGCCA AGTATGTGAT
TTTACCATGT ATCAAGGCGG TGCTGAGAAG CCTCATTTGG TGTCTGAAAC AGATTCGGCT
AGTGATGGAC AGCAAGCTCA AACTGAACAA GTTGCAGGAT AA
 
Protein sequence
MLSMKSISKV FKTDLVETHA LRDFNLEVNE GEFVAVTGPS GSGKTTFLNI AGLLEGFTHG 
DYFLDGVNIS NLSDNKSAAI RNEKIGFIFQ GFNLIPDLNL AENVEVPLRY RGFNAAERKR
RVQHALEQVG LAARMKHLPS QLSGGQQQRV AIARALAGEP RFLLADEPTG NLDSMMARQV
MELLEEINKA GTTIIMVTHD PELARRAQRN IQIVDGQVCD FTMYQGGAEK PHLVSETDSA
SDGQQAQTEQ VAG