Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4039 |
Symbol | |
ID | 6118389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4914845 |
End bp | 4917121 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641635600 |
Product | TonB-dependent receptor |
Protein accession | YP_001762390 |
Protein GI | 170728364 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0501183 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGAT TAATAAATAT AACTCTAATA ATCTCAATCT CTTCCGTTAC ACTCCCAGTG CTAAGCAATG ACTCGGAAAT AGAAGTTATT GAAGTAAGAG CTCAAAAAAG AGTACAGCCT TTGCAAAAAG TCGGCATCAC TATGGCCGCA TTTGGGGAGG AACAGCTAAA AGAGTTAGGT GTAACCGACG TAGTTAATGT CGCTGCAAAT GTGTCAAATG TTCAAGTCAA CTACGGTCTA GGCAATAACT TTTTCAACAT ACGAGGATTA GGGCTAAACG AGTTTACCTC TAACCTAGAT GCACCAGTTG CAGTTCATGT AGATGAAGTT TATATGAGCA AGGGCTTTAT GACGGGAATG ACACTATTTG ATATTGAACA TGTAGAAGTC CTTAAAGGCC CACAGGGGGA TCTTTTTGGT CGCAATACCA CAGGTGGGGC CGTTAACTTT TTTACTAACA AACCTACATC CTACTTTGAG GCTGGAGTCA GTGTTGGATA TGATAACTAT GACACCTTAA CCACAGAAAA CTTTATCTCT GGCCCTTTGT CTGACAACCT TTCTGGACGA TTGTCCATGT ATATAACAGA GCAAGGTGAG GGCTATTACT ACAACACCAA TCGCCAAGAC GATGAAGGGG CCGTAAAAGA GAAAGCCGTT CGTGGCCAAC TCTTATGGGA AAATGATGAC GGAACATCTG CTCTATTGTC AATGCACTAT GGTAAGGATA AATCTGAACT TCATCCCTAT GAAGGGGTAG GCAATACCTT ACCCGATGGA AGTGGTTTTT GCCCTGCTTA CTTAGATGGA ACCGTGCAAG GGGATAATGC CAATTGCTTA CGAGGTTTAG ATCTTATTTT CAATCCAGGC CAAGATATTA GTCAGTACTA CCCAGGAGAA AGTGATCCCT ATATCACTCA AAATAACCTG AGCTTTACCG TCGATAATGA AAGCATAGGC GGGTTAGTCA GAATAGAGCA TCAACTTGAT AATGCTACCC TCTCCTCTAT CACCGCCTAT GAGCAATTCA GTCAAGATCA ACGTGAAGAC TCAGATGGTA GCCCTGTGAC CTCTGTTGAA GTTTATTGGT TCACCGAATT TAAGCAGTTT ACTCAGGAGA TCAGGTTGTC ATCAGATTTT GATCATAACA ACTGGAACTA CATTGTTGGA TTATTCTATG AACATGATGA CTTCGATAAC GCAGATTATT TAACGGCATA TTTACCGTTC AATGGACTCA ACAATTACTC AAAGTACAAC CAAAAAGTCG ATGCAGTAGC TGCATTTGCA CATATAGAAA ATGAGTTAAC GGAAGATTTA AGATTAATTA GTGGCGTTCG ATACAGTTGG GAACAAACTA GCTTAACAGG GGGAACTTAT AAAGGTGAGG GGCTGAAATC AATAGGAGGG GAAGAGCAAC CTGTCACCAT CACGGGAGTT GCATCTACCG CAGCAAACCT TAGCGATGGC GGCCAACGAA CCGATGAAAA CGTCACATTT AAAGCTGGGT TAGAGTGGTC ACCTCAAGAA GATGTACTCT ATTATGGCTC AATCTCTACA GGGTTTAGAA GCGGTGGCTA CAGTGTGGCT TTTGCTGCAA CACAAGATGA ACTCACCAGT TTAGAGCCCG AAGAGATCAC CGCTTATGAG ATCGGATTTA AATCTACACT AGCCGATAGG AGCTTACAAT TTAACGGTTC AATTTTCCGT TATGACTTCC AAAATGGTCA TATTGATGTT GATGCGCCTA ACTCTCCGGT ACCAATTACC ATTAATGCTG CTGAAATTGA AACAATCGGA GCAGAGATTG ATCTTCAGTG GGTACCCATT GATGGGTTAA AACTCAGTTC AGGTGTTGGT TGGGTCGATG CAGAATTAAA AAGCGAGTTA ACCTTACAAA CAGGTATTGG GGAAGTTCAA CTACAGGGGA ATCGTCCTGC ATTTAATCCT AAATACACCT ACAATGGGCA GGCACGCTAT GTGTGGGAGC TACACGATGG TTATGATCTG ATTTTTGCCA GTGATTGGAG CTGGAGAGAT GAGCAATATC TCGAAGTGAA TAACCAACCT AGTAATTTAA TTGACGACTA TTGGATCGTA AATGCACGTA TTGCACTGGA GTCAACCGAA AATGATTGGC GTATCTCTTT ATGGGGAAAA AATATCACTG ACACTCAGTA CGTGACTTAC CTCAATGATC TGCCAGCATT TGGTTGGTTA CTTCGTGGTT ATGGTGCTCC ATCGACCTAC GGCGCAACAT TTGAAATGAA GTTCTAA
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Protein sequence | MNRLINITLI ISISSVTLPV LSNDSEIEVI EVRAQKRVQP LQKVGITMAA FGEEQLKELG VTDVVNVAAN VSNVQVNYGL GNNFFNIRGL GLNEFTSNLD APVAVHVDEV YMSKGFMTGM TLFDIEHVEV LKGPQGDLFG RNTTGGAVNF FTNKPTSYFE AGVSVGYDNY DTLTTENFIS GPLSDNLSGR LSMYITEQGE GYYYNTNRQD DEGAVKEKAV RGQLLWENDD GTSALLSMHY GKDKSELHPY EGVGNTLPDG SGFCPAYLDG TVQGDNANCL RGLDLIFNPG QDISQYYPGE SDPYITQNNL SFTVDNESIG GLVRIEHQLD NATLSSITAY EQFSQDQRED SDGSPVTSVE VYWFTEFKQF TQEIRLSSDF DHNNWNYIVG LFYEHDDFDN ADYLTAYLPF NGLNNYSKYN QKVDAVAAFA HIENELTEDL RLISGVRYSW EQTSLTGGTY KGEGLKSIGG EEQPVTITGV ASTAANLSDG GQRTDENVTF KAGLEWSPQE DVLYYGSIST GFRSGGYSVA FAATQDELTS LEPEEITAYE IGFKSTLADR SLQFNGSIFR YDFQNGHIDV DAPNSPVPIT INAAEIETIG AEIDLQWVPI DGLKLSSGVG WVDAELKSEL TLQTGIGEVQ LQGNRPAFNP KYTYNGQARY VWELHDGYDL IFASDWSWRD EQYLEVNNQP SNLIDDYWIV NARIALESTE NDWRISLWGK NITDTQYVTY LNDLPAFGWL LRGYGAPSTY GATFEMKF
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