Gene Swoo_4037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4037 
Symbol 
ID6118387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4911410 
End bp4913086 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content42% 
IMG OID641635598 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001762388 
Protein GI170728362 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0518356 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCAGG ACTTAACAAG ACAAAGTTAC AAAGAGGGGG AGGGGGACGC AGTGTTTATC 
AATGGCACTA TTGGGCAGAC TTTTGATTGT ATCGCTTCAC AACATCCTAA TGCGCAAGCC
ATTGTTGTTA AACATCAAAA TATCTCTTGG AACTACAGGC TGTATCACCA AAAGGTGACT
CAGTTCGCCG CGGGATTGCT ACAGCTTAAT GTTAAACCCG GTGATAGAGT TGCTATTTGG
GCCCCTAACT GTATTGAATG GTGTATTGCT CAGTTTGCCA CTGCAAAAAT CGGTGCTGTA
TTGGTGTGCA TCAATCCGGC ATATAGGATC TCTGAACTGT CATATTCGCT AAAGAAAGTT
GGCTGTAAAG TATTGATCAC CGCTACAAAC TTCAAATCTT CCGATTACTT AGAAATGATT
GAAACCATAG TGCCAGAACT TAAGTTATGT TCGCCTGGAG AGCTTACTTC TGAAAACTTC
CCATTGTTGA AAAGTGTTAT TCAGATGGGC GATAAAAGCC GTTCTGGTAT GTTTGGTTTC
GATGAGGTGA GTGATTACTG CACTGATGAA TTGATTGAAA AAGTTAATAG CATTGGTCAG
CGTCTTTCTC CTGATGATGC CATTAATATT CAGTTTACCA GTGGTACAAC GGGAGAGCCT
AAAGGAGCAA CCTTGACTCA CAGTAGTATT TTGAATAATG GCTTTCAAGT CGGCGAAAAA
ATGCGCTTAA CTTACGATGA TAAGCTATGT ATTCCTGTGC CGCTATATCA CTGTTTTGGC
ATGGTAATGG GAAACTTAGC CTGCATTACC CACGGCTGTA GTGCGGTATT TCCCAGTGAC
TCATTTGACC CTATTGCTTG TTTAGAGGCG ATAGATGAAT ACCGATGTAC CGCGCTTCAT
GGCGTCCCAA CCATGTTTAT CGCCATTTTA AATGAGCCAG AGTTTAACGC ATATGATTTG
ACGAGTTTAC GTACGGGGAT TATGGCGGGG GCATTATGCC CAATAGAGAC TATCAAGAAA
GTTATCGGTG ATATGAATAT GAAACATATA CTTATCGCCT ACGGACAAAC TGAAACTAGC
CCTGTTAGTC ACATGACGGG TATCGATGAT GCGATTGAGA AACGGGTTAC AACCGTGGGG
AAAATTGGGC CTGGTTTAGA GGTAAAGCTG GTTAATCAAA ATGGGGAGAC TGTGCCAATA
GGCGTGGAAG GGGAGATCTG TATTCGTGGC TATGCCGTGA TGAAAGGTTA CTGGGAAGAT
GAGCAAAAAA CCAAAGAGAC AATCAGCCAA GATGGTTGGC TGCACTCAGG TGATTTAGGT
GAGATGGATA ACGACAATTA CCTAAAAGTC ACCGGACGTA TGAAGGACAT GATTATTCGT
GGTGGTGAGA ACATTTATCC TAGAGAGATC GAAAACTTTT TATATACGCA CCCGACCATT
TTAGATGTAC AAGTCTTCGG TATAAAGGAT GATAAGTATG GGGAAAGTGT GTGCGCATGG
ATAATATGTA AGAAGGATAG ATCATTGACG GTACAGGAGG TTCAAGATTT CTGTAAGGAC
AGTATTAGTC ATTTTAAGAT CCCTGAACAT ATCTCTTTTG TGACCAAATT TCCGATGACA
GTTACAGGAA AAATACAGAA ATTTGTGATG CGAGATATGA TGGAGAAACG ACATTAG
 
Protein sequence
MEQDLTRQSY KEGEGDAVFI NGTIGQTFDC IASQHPNAQA IVVKHQNISW NYRLYHQKVT 
QFAAGLLQLN VKPGDRVAIW APNCIEWCIA QFATAKIGAV LVCINPAYRI SELSYSLKKV
GCKVLITATN FKSSDYLEMI ETIVPELKLC SPGELTSENF PLLKSVIQMG DKSRSGMFGF
DEVSDYCTDE LIEKVNSIGQ RLSPDDAINI QFTSGTTGEP KGATLTHSSI LNNGFQVGEK
MRLTYDDKLC IPVPLYHCFG MVMGNLACIT HGCSAVFPSD SFDPIACLEA IDEYRCTALH
GVPTMFIAIL NEPEFNAYDL TSLRTGIMAG ALCPIETIKK VIGDMNMKHI LIAYGQTETS
PVSHMTGIDD AIEKRVTTVG KIGPGLEVKL VNQNGETVPI GVEGEICIRG YAVMKGYWED
EQKTKETISQ DGWLHSGDLG EMDNDNYLKV TGRMKDMIIR GGENIYPREI ENFLYTHPTI
LDVQVFGIKD DKYGESVCAW IICKKDRSLT VQEVQDFCKD SISHFKIPEH ISFVTKFPMT
VTGKIQKFVM RDMMEKRH