| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3992 |
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| Symbol | |
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| ID | 6118342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4857909 |
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| End bp | 4860542 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635554 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001762344 |
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| Protein GI | 170728318 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000578647 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.249271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATAA GAAACAGGAA GAAGTTTGGC TTCAATGCCT TGAGCTTTGC TGTATCAATG
GCGCTAGCTG GAACACTCGC GTCATCTGCT GCATCGGCAG CTGATGATAA AGACAAATTG
GAAGATGTTG AAAAGATTGC GGTGGTAGGC TCGCGCGCGA CACCAAGATC CATCGGTGAT
TCAACGGTTC CTATCGACAT TATCAGTGGT GATGATATTC GTAAATCTGG TAACTCAGAT
ATGCTGGAAA TATTAAAAGG TGCAGTTCCT TCACTTAACG TACACTCCAA CCCTATCAGT
GATGCAGCAA GTTTAGTCAG GCCTGCGAAC TTACGTGGTT TATCGGCCGA TAGTACGCTT
ATTCTGCTCA ATGGTAAGCG CCGTCACCGC TCCTCTGTGA TCGCCTTCCT AGGTGGCGGT
ATTAACGATG GTGCACATGG CCCTGATATC TCAGTTATTC CAAGTATTGC CCTTAAACAG
GTAGAAGTAC TTCGTGATGG TGCGGCGGCA CAATACGGTT CAGATGCGAT TGCGGGTGTG
ATGAACTTTG TACTCAAAGA TAATGCTGAA GGCGGCTCTT TAGAGGTGAA AACCGGCGAG
TACTATGAAG GTGATGGTGC GACAACTGAG TTGTCTGGCA ATATTGGTAT GCCGCTAACG
GAGGATGGCT TTGTTAACCT GAGCTTCCAG TATAAAAATG CCGATCCAAC CAGCCGCAGT
GTACAGCGCC CCGATGCGCA AGCATTTGCA GATGCTGGGC TAGACGTGGC CAATCCTGCT
CAGATCTGGG GCTCTCCTGA GATCAAAGAT GATATCACCC TGTTTGCAAA CTTAGGCTTA
GATCTCGATG ATCATTCAGA GGCTTATCTT TTTGGTAACT ACTCTGAGCG AGATGTTAAA
GGTGGCTTCT ACTACCGTAA CCCCCATAAC CGTCCAGGTG TTTACTCAAA TGATGATGGT
GCAACACTGC TAGTTGGAGA CTTAACTCCT GGTCCTGTTG GACAGGTCAA CGATGGGCTT
GGTTTAGGTG ATGGTATTGA CTGTCCTGTT ATCAATATCA CTTCTGCAGA TGTTACTCAG
CAGCAAGACT ATATTGATAA TGTTCAGAAT AACCCTAACT GTTTTGCTTT CAATGAGATG
AATGGGTTAG CTGGAGGTTT TACGCCTAAT TTTGGTGGTA ACATTGTCGA TACCTCCCTT
GTTGCCGGTA CTAAAGGTGA GTTCCAGATG GACTTCCTTG AAGGCATTTT ATATGACTTT
AGTGGTTCAT ATGGCAGCAA CGAGTCTAGC TATAAAATTG TTAATACCTT AAATGCGTCA
ATGGGTCCAG ACTCGCCACG TGATTTTAAT CCGGGCAAAT ACATTCAGAC TGAGTGGAAT
TTTAATGCCG ACTTTGTCAA ATTTGTCGAT TGGGGTCTTG CCGATGACGT GAGTATCGCG
ACGGGCCTAG AGTGGCATGA TGAAACCTTT GAAGTGGTTG CTGGTGATGA GGCTTCATTT
AAAGTTGGCC CGCTATTCTC ACAAGGTTTT GGTATCGGTT CTAACGGTTT CCCTGGTTTT
CAGCCATCAG CAGCTGGTGA ATATACTCGT AAGAATAAAG CGATATACCT AGATACCAGC
ATGCCTATTT TTGATAGCTT AGTGGCAGAG TTTGCTGTGA GATACGAAGA TTATGATTCG
TTCGGTTCAA CGGTAAATTA TAAACTAGCG GCTAATTGGA ATATTATTGA TGAGCTTGCA
GTTCGTGGCT CGTTTAATAC AGGTTTCCGT GCGCCAACAG TTGGTCAAGC GAATGTGAGT
AATGTACAAA CTAACTTATC TGGCGGTGTA TTAGTTGACT CGGCGTTGCT GCCGCCAACT
AACCCTATCT CTGCACAGCT TGGTGGTACA GAGCTTACGC CTGAAGAGTC AAAAAGTTTC
ACTTTTGGTA CGGTTTATAC TCAAGGAGAT TTCTTCTTAA CCGTTGATTA CTACAACATT
AAGGTTGACG ACCGTATTAG CCAATCTGAG AAGATTGAGT TAACTGATGC TGATAAGGCA
ACTTTGAAAG CTGCCGGTGT ACCTAATGTT GATGGCCTGT CGCAGGTGAG CTTCTTTACC
AACGATTTTG ATACCACCAC TCAAGGTGTT GATATTGTTG CAAACTACTC TGCTGAGCTG
TTTTCGGGAG ATTCAACCTT TGCGCTAGCC TATAACTGGA ATAAGACAGA AGTTGACAGA
TACACAGATA TTACTGGTGA CTTTAAAGTT TCTCGCCTAG AGAACGATCT GCCAAACCAC
CGTGCTACCT TCACCTGGGG TCAGAGCTGG GATCAGTTTA ACCTGTTTAC CCGTGTGAAC
TATTTCGGTG AGTACCAAGG TGTGCACGTT GATTACGATG CTACGATCAA TACTGGTGAA
GCTGCGGTGA CTGTAGATAT GGAGCTAAGC TACTTTATCA ATGACTCTTT CAGTGTTGCT
CTAGGTGCGC AAAACTTGTT TGACCAAGAT GCCACTGAGA TTGACTTTAC TCCTGCAGGA
GCTGCTGAGT GTGGCGGTTG TACCAATAAC CAGTGGGGTG GTATCTATTA CGAGACATCG
CCATTTGGCT TTAACGGTGG TTACTACTAC CTTAAAGGCA CCTACACCTT CTAA
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| Protein sequence | MTIRNRKKFG FNALSFAVSM ALAGTLASSA ASAADDKDKL EDVEKIAVVG SRATPRSIGD
STVPIDIISG DDIRKSGNSD MLEILKGAVP SLNVHSNPIS DAASLVRPAN LRGLSADSTL
ILLNGKRRHR SSVIAFLGGG INDGAHGPDI SVIPSIALKQ VEVLRDGAAA QYGSDAIAGV
MNFVLKDNAE GGSLEVKTGE YYEGDGATTE LSGNIGMPLT EDGFVNLSFQ YKNADPTSRS
VQRPDAQAFA DAGLDVANPA QIWGSPEIKD DITLFANLGL DLDDHSEAYL FGNYSERDVK
GGFYYRNPHN RPGVYSNDDG ATLLVGDLTP GPVGQVNDGL GLGDGIDCPV INITSADVTQ
QQDYIDNVQN NPNCFAFNEM NGLAGGFTPN FGGNIVDTSL VAGTKGEFQM DFLEGILYDF
SGSYGSNESS YKIVNTLNAS MGPDSPRDFN PGKYIQTEWN FNADFVKFVD WGLADDVSIA
TGLEWHDETF EVVAGDEASF KVGPLFSQGF GIGSNGFPGF QPSAAGEYTR KNKAIYLDTS
MPIFDSLVAE FAVRYEDYDS FGSTVNYKLA ANWNIIDELA VRGSFNTGFR APTVGQANVS
NVQTNLSGGV LVDSALLPPT NPISAQLGGT ELTPEESKSF TFGTVYTQGD FFLTVDYYNI
KVDDRISQSE KIELTDADKA TLKAAGVPNV DGLSQVSFFT NDFDTTTQGV DIVANYSAEL
FSGDSTFALA YNWNKTEVDR YTDITGDFKV SRLENDLPNH RATFTWGQSW DQFNLFTRVN
YFGEYQGVHV DYDATINTGE AAVTVDMELS YFINDSFSVA LGAQNLFDQD ATEIDFTPAG
AAECGGCTNN QWGGIYYETS PFGFNGGYYY LKGTYTF
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