| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3989 |
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| Symbol | |
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| ID | 6118339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4856040 |
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| End bp | 4856603 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635551 |
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| Product | pilin, putative |
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| Protein accession | YP_001762341 |
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| Protein GI | 170728315 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.387559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATTACC ACTCTCCACC CAGAGCATTA ACCCAAAACG CAGGCTTTAC TTTGATAGAG
CTTGTTGTGG TGATCATTAT ACTCGGGATC CTCTCAGTGG TCGCCCTACC AAAATTTATT
AATCTCTCTG AAGATGCTCA TGTTTCAGCC GTCGCTGGTA CGGGTGGCGC ATTTAAATCT
GGGATCAACC TAGCAAGGAG TGTCTGGGCA GTGCGTGTAG GCTCAGGCCC AGCAGATGAT
CTACCTACCT TCGGAGACTC TGAAAGTGGA GAGCTGGACT TCAATGACAA TGGCTGGCCA
GCACAACATT GGGGAACACC TGACTCAGAT GGAGACTCAC CCCAACTCGA TAATACAGAA
GATTGTATCT CAGTATGGGA AACTATCTTT GCAGGTAACG AGCCTAGCGT ATCAAGCAGT
ACGTCAACTG ATGAGACGGA CTATAAAGCG AACTATATCT CGCCAAACCA GTGTCGCTTT
GACTACAGAG ATAATCTCAA CTTAAGTATC AGTTATGATT CTCGCAACGG CAGTGTCGTC
ATCGATAAAG ATCCCAATAG TTAA
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| Protein sequence | MHYHSPPRAL TQNAGFTLIE LVVVIIILGI LSVVALPKFI NLSEDAHVSA VAGTGGAFKS
GINLARSVWA VRVGSGPADD LPTFGDSESG ELDFNDNGWP AQHWGTPDSD GDSPQLDNTE
DCISVWETIF AGNEPSVSSS TSTDETDYKA NYISPNQCRF DYRDNLNLSI SYDSRNGSVV
IDKDPNS
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