Gene Swoo_3963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3963 
Symbol 
ID6118312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4829378 
End bp4830742 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content42% 
IMG OID641635524 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001762315 
Protein GI170728289 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTAC GAAACTCGGT ATTTATTGCT ATCTTTGCTA CCGCTTTAAT CAGCACTATT 
TTTCTACTTC TGTTACAACA AATTAGGTTT AGTTATGCGT TTAACGAGTA CATGAGCAAA
AGTCGAACAG AGCGAATTGA AAAACTGCAC CTGAGATTAA CAGACGGTTT TGCGGAAACA
GGTAACTGGC AATTTCTCAC GGATCAGTTT GATACGGCAA ATTCTGATAA CAATACAGCA
GATGAACAGA ATTTAGAACG ACTAAACAAA TGGTTGCTAT GGTTCGATTT TCCTCGTGGC
GTCGCAATAT TAGACGCAAA CAATGCCGAG CTAATTGGCG AGTTTGAATC AAACATGCAA
TTAACCGCTA TTTTCCATCA AAACGAAGAG GTTGGCTTTC TTGCGGTAAA AGATAACAGT
GAGGTCAAAG CTGAGCTCGA TAGCCACTTT GTTAAGCAGC AGATCAGAAG TCTCATTTTC
ATTACACTTC TAACCCTGCT TACCGCGTTG TTATCAGCTT ATTTCTTTTC CCGTAAGCTC
ACCAGACCGA TTTCCGATAT CGCCAATGTA TTGAACAATC TTCGTAAAGG CGACTTTTCA
ACGCGTAGTG AATACAAACA TAGCAATGAA CTTGGCCAGT TATCCTCCGA TGTAAACTAT
TTAGCCAATA CACTTGAGCA AAACCGAGAT TCTCGTCAAC GCTGGATAAC GGATATATCC
CACGAATTAC GTACACCCAT TACCATTATG ATGGGTGAAC TGGAATGCTT GGAAGATGGA
CTCACGCCTT TTGACAGCAA GGCCGTGACC TCGTTGAAAG AGGAAGTCTC AGGGCTTAAT
AAGCTGGTGG CGGATTTACA CCAATTAACT ATAGCGGAGC AGGGCGAATT ACGCTTGGAG
TGCCAACCAA ACAACATCAG CGAAATGGTT CAAAAATGTC TGCAAAAGTA CCAACCTATT
TTTACCGAAA GAGACATAAC CACGACTAAT CAACTGCCAA GCTCGTTAAT AGCTCACGTC
GATAAAACTC GATTGCAACA AGTGTTGGTT AACCTATTTG AAAATTGCGC CCGTTATACC
GACATAGCGG GTGACATTCG AATCTCCGCA AGCCAAGACA ATCAATTTGT CACCTTGGTG
ATTGAAAATA CCGCTCCAGA AATATCGGAA GAATCTCTGC CTAAATTGTT CGACCGACTC
TATCGTGTCG ATGAATCCCG CAATAAATTC TCTGGTGGCA GTGGTCTTGG CTTAGCTATC
TGCACTGCGA TAGTTGAAGC TCATGGGGGC AAGATCCGCG CTACCTATTC ATCACTCAAC
GGTTTGGCGG TCTCTATGAC ATTACCCGTA AGTTCAATTA TTTAA
 
Protein sequence
MKLRNSVFIA IFATALISTI FLLLLQQIRF SYAFNEYMSK SRTERIEKLH LRLTDGFAET 
GNWQFLTDQF DTANSDNNTA DEQNLERLNK WLLWFDFPRG VAILDANNAE LIGEFESNMQ
LTAIFHQNEE VGFLAVKDNS EVKAELDSHF VKQQIRSLIF ITLLTLLTAL LSAYFFSRKL
TRPISDIANV LNNLRKGDFS TRSEYKHSNE LGQLSSDVNY LANTLEQNRD SRQRWITDIS
HELRTPITIM MGELECLEDG LTPFDSKAVT SLKEEVSGLN KLVADLHQLT IAEQGELRLE
CQPNNISEMV QKCLQKYQPI FTERDITTTN QLPSSLIAHV DKTRLQQVLV NLFENCARYT
DIAGDIRISA SQDNQFVTLV IENTAPEISE ESLPKLFDRL YRVDESRNKF SGGSGLGLAI
CTAIVEAHGG KIRATYSSLN GLAVSMTLPV SSII