| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3953 |
|---|
| Symbol | |
|---|
| ID | 6118302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4817292 |
|---|
| End bp | 4818770 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635514 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit D |
|---|
| Protein accession | YP_001762305 |
|---|
| Protein GI | 170728279 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAGCTC ACCTACCTAT TTTGCAAGTC GTGCTACCAC TAATGGCTGC GCCGTTATGC
TGGTTTTTAA ATCGCTCGAA GCTAGTGTGG ATGTTTGCCT TATTGGTCTG TGCTGCCACC
AGTGTCAACA GCATACTGTT ACTGATAGAG GTCATGAAAT CTGGCCCTAT TATCTATGAG
TTAGGTGGCT GGGAGGCACC TTGGGGAATA GAGTATCGTA TCGATCAACT TAACGCCTTC
TTACTGCTCA TCATCTCCAC CATAGGCACT GTGGTGTTGT TTGCTGCTCA AACAAGCATC
CAAAAAGAGT TAGATGAAGA CCGTCATACC CTATTTTACA GTCTCTATCT GTTGTCCTTA
ACCGGCATGT TCGGCATTGT GGCGACTGGT GATGCATTTA ACGTATTCGT ATTTTTAGAG
ATATCTTCAC TATCTGCCTA TGCCTTAATC GCCTTAGGCA GAGACAGACG AGCATTATGG
GCTGCCTACC AATACCTGAT AATGGGCACC ATTGGTGCCA CCTTTATTCT GATTGGTATC
GGCATGCTCT ACCAGATGAC TGGCACGCTC AACATGAGCG ATTTGGCCAC TCGACTAGTC
GATGTTGGCC ACACCCGCAC GGTATTTGCA GCATTTGCCT TCTTAATCGT CGGGATCTGC
TTAAAGCTGG CACTGTTCCC ACTTCACCTG TGGTTGCCCA ATGCTTATGC CTATGCGCCT
TCAATCGTAA CCGCATTTTT AGCGGCCACC GCAACTAAGG TGGCGGTGTA TCTGCTGATC
CGCTTTACCT TTACCGTATT CGGCATCTCT TTCTCATTCA CCACCCTGCC CCTGCAGAGC
ATTTTGATGG TGCTAGGTCT TATGGGGGTA TTTGCCGCCT CTATCACCGC GATATATCAG
CAAAATGTTA AGCATATCTT GGCCTACTCG AGTATCGCTC AAGTGGGCTA TATGATTATC
GGTTACTCCA TCAATACCAG CACTGGGGTA ATGGCAAGCT TACTGCACCT GTTTAACCAC
GCCTTAATGA AGGGGGCGCT CTTCTTAGCG TTAGGCGCAG TAATGTACCG CATCGGCAGC
GTGCAGCTCA GTCAATTCCA AGGGCTGGGA CGACAGATGC CATTGACCAT GTCAGCCATT
GTTATCGGCG GGTTGAGTCT GATTGGTGTG CCATTAACCG TAGGCTTTGT CAGTAAATGG
TATCTGCTTA TCGCCAGCGT CGAAGCAGGC ATGTGGCCTG TGGCTGTACT GATTCTATTA
GGGTCACTAC TGGCGATTGT GTATATCTGG CGTATTGTGG AAACTGCCTA TTTTAGGCCA
CCACTTCCAG GGCGTGAAGC GGTCAAAGAA GCACCTTGGA CCTTCCTTGG CCCTATTTGG
CTCCTCGTTA TCGCTAACAT CTATTTTGGT ATCGATACTC GTCTGAGTGT GCAGGTCGCA
CAGGCGGCTT CTCAAAGTTT GTTTGGAATT AACCCATGA
|
|---|
| Protein sequence | MLAHLPILQV VLPLMAAPLC WFLNRSKLVW MFALLVCAAT SVNSILLLIE VMKSGPIIYE
LGGWEAPWGI EYRIDQLNAF LLLIISTIGT VVLFAAQTSI QKELDEDRHT LFYSLYLLSL
TGMFGIVATG DAFNVFVFLE ISSLSAYALI ALGRDRRALW AAYQYLIMGT IGATFILIGI
GMLYQMTGTL NMSDLATRLV DVGHTRTVFA AFAFLIVGIC LKLALFPLHL WLPNAYAYAP
SIVTAFLAAT ATKVAVYLLI RFTFTVFGIS FSFTTLPLQS ILMVLGLMGV FAASITAIYQ
QNVKHILAYS SIAQVGYMII GYSINTSTGV MASLLHLFNH ALMKGALFLA LGAVMYRIGS
VQLSQFQGLG RQMPLTMSAI VIGGLSLIGV PLTVGFVSKW YLLIASVEAG MWPVAVLILL
GSLLAIVYIW RIVETAYFRP PLPGREAVKE APWTFLGPIW LLVIANIYFG IDTRLSVQVA
QAASQSLFGI NP
|
|---|
| |