| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3942 |
|---|
| Symbol | |
|---|
| ID | 6118291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4807695 |
|---|
| End bp | 4810301 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641635503 |
|---|
| Product | UTP-GlnB uridylyltransferase, GlnD |
|---|
| Protein accession | YP_001762294 |
|---|
| Protein GI | 170728268 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2844] UTP:GlnB (protein PII) uridylyltransferase |
|---|
| TIGRFAM ID | [TIGR01693] [Protein-PII] uridylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACT CAGATATATC GCCTCAATTC AGTTCCAAAA TGAGCATTAG TGATTATAAA
AAAATAATTC AAGATGCTGA CAACTACTTT AATGATAACT TTACCTATAT TGCTATTGAT
GAAATTGTAA AGTTACGTGC CGATTTCTTT GATACTCTGC TGCTTCACCT ATGGGAGTGC
GCCGAGCTAA CCTCCGACAA TATCTCTCTC AACGCCGTTG GTGGCTATGG CCGTCAAACC
CTACATCTTC ATTCTGATAT CGATATCTGT GTACTTTTCT CCCAAACGCT CACGCCCCAA
GAGGAGTCTC AAATTGGTCT TTTCTTTACC CAGTTGTGGG ATCTTGGTTT AGAGCTTGGT
CATAGTGTAT TGGGATTGAG TGAGGTAGAT AAAGCCTGTA AAGAGGATAT CTCTACCGCG
ACCTCACTGT TCGAGATGCG TCACTTAACG GGTCCAAAAT CCCATGCTGA AGAGGTGTTA
AGTCGACTAT ATGGCGATAA TCTCTGGAGC AGTGAAGCCT TTTTTAATGC AAAGGTGATT
GAGCAAGATG AGCGCCACCA AAAAGCCCAA GGCAGTGCTT TTAGCCTAGA GCCAAACTTA
AAAAATAGCC CAGGGGGAAT GCGCGATATT CAAACCCTTA TCTGGGTTAC CCGTAAGTAT
TTTTCCGCTG AAGATATGGC GGCTTTAAGG CGCTTTGGTT TCTTTACCTC TGATGAGTAC
TCGGAGTTGC TAGAATCACA GAACTTTATT TGGCGAACTC GTTGGGCACT GCATGCTGCA
GCGCAGCGTT CTGAAAATCG TCTGCTTATT TCTTTGCAAA GTGATGTCGC GCGCCTTATG
GGGTTTGGCG ACAACAGTCA CCTGGCTATC GAAAAGATGA TGCGTCAGCT ATACCGTGCT
ATGAGGCGAA TTAGCGAACT TAACCAGATG CTACTGCTCT ATTTTAAGGA TGAGCTTTTA
GCGCAAACTG ATAAAAAGAC GACCCTGTTA AATGAACATT TTGAGATAAA TAGCCGACTC
ATTAATGCAC GCCATGATGA TGTTTTTGTT GACCGTACTC AGCTGATGGC ACTCTTTATT
CATATTGCAG AAAATGCAGA TGATATTGAT GGTATTTCAC CACAAACGAT TCGTTTGATC
CGTCAAGTAA GACGCCGTTT GCTTGGGGAT CTACAAGATT TTCATCGTTG TCGGAAGGAG
TTTATCTCTC TATTTCGCCA TCCAGAAGGG ATGGGGCTGG CACTATCATT AATGCTTAAA
CATGGTGTTC TAGCCTCATA TCTACCCCAA TGGCGTGAGA TCGTAGGGCA GATGCAGTTC
GATCTTTATC ATGTTTACCC CGTTGACGAG CATACTCATA AATTACTTAA AAACCTCTAC
TCCTTAAAAG ACAAGCCTGA GTCGGCCTCG CTTGTACAAC CTAGTGCGGT TTACAAAGCG
ATTGAGAATA AAGAGGTGCT ACTGTTAGCT GCACTGTTCC ATGATCTCGC CAAAGGTCGT
GGTGGCGATC ATAGTGAGTT GGGCGCGGTT GATGCGATGC AGTTTGCCAA GTTTCATGAA
TTGAAACCAT CTCAAGCTAA AGTTATTGCC TGGTTAGTGC AGAATCATCT GCTGCTATCT
CTCTCCTCAC AACGACTCGA TATTTATGAT CCTTCGGAAG TGAAGAACCT TGCTAAAACC
ATAGGAACTA AAGCCAGACT CGATGCTCTC TACTGTTTAA CCGTTGCGGA TATTAAAGCA
ACCAATGATG ATCTGTGGAC AAATTGGAAG GCCACGTTAC TTCGTGATCT ATATATGTCG
ATAAGCTTTG CCCTACGTAA TGGCTTAGAA AACGTGTTAG AGCAGCGAAC AATTGTCCGT
GAACATAAGA ATGAAGCCCT AGAGTTGATG GGGATGAGTG AAATTTCCGA AGAGATTAAA
CTGCTCTGGA AACGCCTGCC TTTATCATTT TTTAGTAATG CTCAACCCAG CGATATTGCT
CGTTACTCCC AAGCTATGAT CCAGTACCCA GCAGAGCATG CACTTATTTT ATTGGATGAG
GGCAGCACTA AGGGCTGTAG TGATCTATTT GTCTATATGA AGGATAAACC GGGTCTGTTT
GTTACCCTGT TTAACACTTT AGCATCGCTG CAGATCTCTG TGCAGCAAGC TAATATCTCT
AAGACAAAAG ATGGTTACGT GGTGGAGTCG TTAAAAATAC TCGATTATGA CCAGCACCCT
ATACGTACTG CTGGTCGACG TGAAAGTATT AAGCTGAAGC TGGAGCAGGT GTTATTTCAG
AATAAGAAGG TCTCTAAACA GCGCCTTAAC AGTAACTTGG ACTCATTTGT CAGTGAGCCT
AAAGTGGAGT TTTTGCATTC GCGCAAAAAA GACAGAACCT TGATTAGTGT GACGGCTCTG
GATAATCCAC AATTTATGAG CCACTTCTGT AATGGATTCA GGCAGTTTGA GCTCAATATC
CACTCGGCCA AAATCACTAC AGTGGGTGAG CAGGTCGATA ATGTCTTTCT TGTTTCAGAT
AAAGATGGCC AGTCTCTCGA CGATGAGAGT AAGCAAACCT TAAAGTCCTT CTTTGTTGAT
TTCATTAAGG AGCAGCCCAC AGCCTGA
|
|---|
| Protein sequence | MSDSDISPQF SSKMSISDYK KIIQDADNYF NDNFTYIAID EIVKLRADFF DTLLLHLWEC
AELTSDNISL NAVGGYGRQT LHLHSDIDIC VLFSQTLTPQ EESQIGLFFT QLWDLGLELG
HSVLGLSEVD KACKEDISTA TSLFEMRHLT GPKSHAEEVL SRLYGDNLWS SEAFFNAKVI
EQDERHQKAQ GSAFSLEPNL KNSPGGMRDI QTLIWVTRKY FSAEDMAALR RFGFFTSDEY
SELLESQNFI WRTRWALHAA AQRSENRLLI SLQSDVARLM GFGDNSHLAI EKMMRQLYRA
MRRISELNQM LLLYFKDELL AQTDKKTTLL NEHFEINSRL INARHDDVFV DRTQLMALFI
HIAENADDID GISPQTIRLI RQVRRRLLGD LQDFHRCRKE FISLFRHPEG MGLALSLMLK
HGVLASYLPQ WREIVGQMQF DLYHVYPVDE HTHKLLKNLY SLKDKPESAS LVQPSAVYKA
IENKEVLLLA ALFHDLAKGR GGDHSELGAV DAMQFAKFHE LKPSQAKVIA WLVQNHLLLS
LSSQRLDIYD PSEVKNLAKT IGTKARLDAL YCLTVADIKA TNDDLWTNWK ATLLRDLYMS
ISFALRNGLE NVLEQRTIVR EHKNEALELM GMSEISEEIK LLWKRLPLSF FSNAQPSDIA
RYSQAMIQYP AEHALILLDE GSTKGCSDLF VYMKDKPGLF VTLFNTLASL QISVQQANIS
KTKDGYVVES LKILDYDQHP IRTAGRRESI KLKLEQVLFQ NKKVSKQRLN SNLDSFVSEP
KVEFLHSRKK DRTLISVTAL DNPQFMSHFC NGFRQFELNI HSAKITTVGE QVDNVFLVSD
KDGQSLDDES KQTLKSFFVD FIKEQPTA
|
|---|
| |