Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3890 |
Symbol | |
ID | 6118239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4742254 |
End bp | 4743216 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641635452 |
Product | folate-binding protein YgfZ |
Protein accession | YP_001762243 |
Protein GI | 170728217 |
COG category | [R] General function prediction only |
COG ID | [COG0354] Predicted aminomethyltransferase related to GcvT |
TIGRFAM ID | [TIGR03317] folate-binding protein YgfZ |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00117726 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000179046 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCAGT CTGTTTCTCA GCTCGCTTGG AATCCGAGTG AATCCGCTCA ACTTATCTTT GCTAACCTGT CTCATATGGG ATTGATGAGT GTGACTGGCG AGCAAGGCCG TAGCTTCATT CACGGGCAGG TCACCACAGA TATCAGCTCA CTTGAGAGCA ACCAATGGAG ATGGGGTGCT CACTGCGATC CTAAAGGAAA GATGCTGGCC AGTTTCAGAA CCTTCTCGGT TGCAGATGCC CTCTTTATGA TGATGCCAAA AGATACCTTG GCGGCAGATC TACCACAACT GGCTAAATAC GCCGTGTTCA GCAAGGCTGA CCTTGTTGAT GTATCTGCAG ACTGGACCAT CTTAGGCGTA GCTGGAGAGC AGGCACAGGA GTGGGTAAAT AACTACTTTG GTGAGATCAC CCAAGAGTTA ACTGAGATCC CAGGCGGTGT ACTGCTTAAA GATGGCGAAC GCTTTATTAT CATTATAGAG AATGCCCCTT CTGAGCCACT ATTAAGCTCA ATCAATACGC CAATCCAAGA AAGTAGTGCA TGGCAAGCAT TGGAGATCCA AGCTGGCCTG CCTAACCTAG GCGTCTCACA TCAAGGTCAA TTTGTGCCGC AGATGTGTAA TGTACAAGCA ATTAACGGTA TCAGCTTCAA AAAAGGTTGC TACATGGGCC AAGAGACCAT CGCACGCATG AAATACCGTG GCGGCAATAA GCGCGCCCTC TATATTCTCT CAGGCACCAG CTCACAAACC TTAGCGCTAG ACAGCCGATT GGAGCTTGCC ATCGAAGATG GCTTTAAAAA GGTCGGTACC ATTATCGAGC TAGTGCAATC AGGCGATCAG GTACTGCTTA GTGCTGTCCT ACCTAATGAC ACGGAAAACA GCGCCAAGTT AAGAGTTGCC GACGATGAGA CCTCAAGCCT AACTATTCAG CCACTGCCCT ACTCACTAGA AGATGAAGCT TAG
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Protein sequence | MTQSVSQLAW NPSESAQLIF ANLSHMGLMS VTGEQGRSFI HGQVTTDISS LESNQWRWGA HCDPKGKMLA SFRTFSVADA LFMMMPKDTL AADLPQLAKY AVFSKADLVD VSADWTILGV AGEQAQEWVN NYFGEITQEL TEIPGGVLLK DGERFIIIIE NAPSEPLLSS INTPIQESSA WQALEIQAGL PNLGVSHQGQ FVPQMCNVQA INGISFKKGC YMGQETIARM KYRGGNKRAL YILSGTSSQT LALDSRLELA IEDGFKKVGT IIELVQSGDQ VLLSAVLPND TENSAKLRVA DDETSSLTIQ PLPYSLEDEA
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