| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3888 |
|---|
| Symbol | |
|---|
| ID | 6118237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4740121 |
|---|
| End bp | 4740723 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635450 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001762241 |
|---|
| Protein GI | 170728215 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3647] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.440591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000179046 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAATAAAC AGCATATTTG GCTGACTATT TTCCTATTAG TCCTGATTTG GTCAGGTATT
AACCCTAAAG ATCAATTTAC CTGGTTTTTA GAAGTGGCCC CAGCTTTGAT CGCTTTGCCT
GTGATGTTCT TTACCCGAAA ACGCTTCCCT CTGACACCTA TGCTCTATGT GTTGATCCTT
ATTCACTGTG TTATTTTAAT GGTGGGAGGC CACTATACCT ATGCAGAAGT GCCGCTATTT
GATTGGATAG CCGATGCCTT AGGCAGTGAC AGAAATAATT ACGATAAGGT GGGGCATTTT
GCCCAAGGCT TTATTCCAGC TTTGATCGCC AGAGAGGTAT TTATTCGCAA TCAGGTGGTG
AAGCCTGGTG TTTGGTGCAG CTTTATCTGT GTCTGTTTTG CGCTGGCTCT GTCGGCATTT
TATGAACTGA TTGAGTGGTG GGTTGCCCTG TTAACTGGCG AAGATGCCGA GGCGTTTTTA
GGCACCCAAG GTTATATTTG GGATACTCAA TCGGATATGG GCATGGCGTT ATTGGGCGCT
ATAGTGGCGC TGTTGGTACT TGTTAAGACC CATAATAAAC AGCTTGCGGC ACTGAATGAT
TAG
|
|---|
| Protein sequence | MNKQHIWLTI FLLVLIWSGI NPKDQFTWFL EVAPALIALP VMFFTRKRFP LTPMLYVLIL
IHCVILMVGG HYTYAEVPLF DWIADALGSD RNNYDKVGHF AQGFIPALIA REVFIRNQVV
KPGVWCSFIC VCFALALSAF YELIEWWVAL LTGEDAEAFL GTQGYIWDTQ SDMGMALLGA
IVALLVLVKT HNKQLAALND
|
|---|
| |