| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3886 |
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| Symbol | |
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| ID | 6118235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4735856 |
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| End bp | 4738540 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641635448 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001762239 |
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| Protein GI | 170728213 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000584422 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGGTTGA AAAAAATGGA TAATGTTAAA AAATTGTCAG TGCTTGCACT GTCAATAGCC
GCTGCTTTGC CTGCTGTGGC CAATGCTGAT GTACTTATTA GCGAATATGT TGAAGGTTCC
GGTTATAGCA AAGCGGTTGA AATATACAAT TCAGGATCGA CGGCCGTTGA TCTGACAGGT
TACTCCCTCG TTTACTACTC AAAGGGCGAA ACAGCTCCTA AAAAAATCTT AGATCTCAGT
GGTTCTCTTG GGGCTAATGC CATTAAGGTG ATCACCAATA ACCATAAAGA TAACGCTATC
GTATTAGATG CTGCTGTAGA CTCACAGAGC GCTGCTATCT ACTTTAATGG CGATGACAAG
GTTGGGATCT TAAAAGGCGA TACCTTAGTT GACCTGTTTG GTGAAGTTGG CACAACAGGT
GATTGGGCCA AAGATATCAC TGCTGAGCGA AATGCTAATG TCACGGCTGC AAGCTCAACC
TATGTTGAGA GTGAGTGGAC CACAAAGGCA AAGAACACTT TTAGTGGCTT AGGTGCCCGC
AGTGGTGACT TTGGTGGCGG AACAGGGACA GATCCGGAAG TACCAGCCTT TAGTTGTGTT
GGTGAAACCA TCACACCTAT CTATGAAGTG CAGGGCGTAG GTCGTGTAAG CCCGCTGATT
GAAGAGGGCA AGTTCGAGTC TGCTGAAGAG GTCACGATCA GTGGTGTGGT TACCGCCCGT
GGTGAGAGTC TGTTTAAAGG CTTCTATCTG CAGGAGATCA AAGGGGATAA CTCGCCTTAC
ACATCAGACG GTGTATTTGT TTACTTAGGC GAAGCAGCGC CTGAGGAGAT CCAGCCCGGC
GTTGAGGTGT GTGTTCAAGG TAAAGTGAAG GACTTCTACG GCCTGACTCA GGTTGATATC
AAGGCAGACA AGAAGATGGC TGTGGGTGAG ATGGGTGAAG TCCCAGCACC AGAAGCTTTC
TATGTTGCCG ATGGCGAATC CTTGGGGGAT GCCCTTAATC GCTATGAAGG GATGAACATT
GTTTTGGATG CTGGCAGTGA CATGAAGGTC ACTCGTAGCT TTAGCTATGA CTACGCCGGT
AGAAGAAACA ACATGGTGTT GTCCCATAAA TCACCACTAA TGAAGCCAAC TCAGGTATTT
GCCCCGCTCT CTGATGAAGC GATTGCGCTA CAAGAGGCCA ACCGTGGTAA TGAGCTGTAT
GTTGAGTCTG ACTATAAAGC GAAAAATGGT GAAGTGCCTT ACTTCCCGAC ATTTAACGCT
GAGACTGGCT ATATACGTAT TGGCGATCAG CTCACCAATA TGACGGGGAT GGTTAGCTAT
AGCTATGGTG CACCACGTCT TGTGGTCACC AATGAGATCA CAGCAGGTGA TTTTATCCGC
ATTAATGACC GTACTCAGTC ACCTGAAGTT GCCACCCAAG GTGATATTCG CGTTGCCAGC
TTTAACGTGT TGAACCTGTT TACCAGTGAC AGCGATATCG GTGGCCCGCT AAATCCTATG
TGTAAAGATC AAGCTGACGC GGATGCCAGC AGAGGCTGTG GTCGTGGTGC TCACTCTCTA
GAAGATTACC TGCTTCAGCG GACTAAAATC GTTAATGCGA TTAAAGAGAT GAACGCTGAT
GTGATAGGTT TGATGGAGAT AGAGAACAAT GGCTTTAGTG AGCATAGTTC GATCCAGTAC
TTGCTCAATG CGATTAATGC CGAGTTACCA GCAGCCGATG CCTACGCCTT TATTGAGGTG
AATGACGCCG ATAAGTACAA GGGTGAGTTT ATCGGCAGCG ATGCGATAAC GGTCGGCCTG
CTGTACCGCC CGAGTACCGT AAAACCTACT GGGGACGCAT TTGTCATTGC AACGCCTGAG
CAGCACTCTG TTGCTGGCGT TGCCACTCGA GATAACAATG GCACGGTGGA GGAGAGCCCA
AGCTATGATA AGTATCAACG TCACAGCTTA GCGCAAACTT TCCAGATCCA TGATGAGAAG
CTAACCGTTG TAGTGAACCA CCTTAAATCG AAAGGCTCTG GCTGTTTAGA GGATTGGTTA
GAGTTCTCTG AGAGCAAAGA TCCTGCCGAT CTCCAAGGTA AGTGTAACGA GTTCCGAGTT
TCTGCAGCCA AGGTTCTGGG TGAGTCACTC AAAGATGTCG AAGGCGGCCT GTTGGTCATC
GGTGATATGA ATGCCTACGG CATGGAAGAT CCGGTTGCCG TGCTAACCGA TTATGATGCT
TCGACAGCTA AGCGTGAGAT CGTGACCGCT TCATGGACCA CACTCAATGG TGAAGTCTAT
GAGCGCGAAG GGAGTAAGAT TGACAAGGGG TATGGACTGG TTAATCTGAA CACTCAAGCC
CACGGACCTG CGACCTTTGG TTACAGCTAT AGCGGTGAGC TAGGTAACTT AGATCACGCG
TTAGCAAACA CACAAGTTGC TGACAAGTTG GTAGGGATAG AGGATTGGAA CATCAACTCG
GTTGAGTCGG ACCTGTTTGA GTATCCGAGT AAGTATTCCG GCGACTTAGC TAAGTCTGAG
AATGCCTTTA GCTCCTCTGA TCACGATCCT GTGATCATCG CACTGGAATA CCCTGCGCCA
ATTCCACCTA AACCTGAGCC AACACCTAAA GATGATGGTG GTTCATTAGG TTATTTAGGA
TTGGCTCTGT TATCACTACT GGGATTACGT CGTAAAACAC GTTAA
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| Protein sequence | MGLKKMDNVK KLSVLALSIA AALPAVANAD VLISEYVEGS GYSKAVEIYN SGSTAVDLTG
YSLVYYSKGE TAPKKILDLS GSLGANAIKV ITNNHKDNAI VLDAAVDSQS AAIYFNGDDK
VGILKGDTLV DLFGEVGTTG DWAKDITAER NANVTAASST YVESEWTTKA KNTFSGLGAR
SGDFGGGTGT DPEVPAFSCV GETITPIYEV QGVGRVSPLI EEGKFESAEE VTISGVVTAR
GESLFKGFYL QEIKGDNSPY TSDGVFVYLG EAAPEEIQPG VEVCVQGKVK DFYGLTQVDI
KADKKMAVGE MGEVPAPEAF YVADGESLGD ALNRYEGMNI VLDAGSDMKV TRSFSYDYAG
RRNNMVLSHK SPLMKPTQVF APLSDEAIAL QEANRGNELY VESDYKAKNG EVPYFPTFNA
ETGYIRIGDQ LTNMTGMVSY SYGAPRLVVT NEITAGDFIR INDRTQSPEV ATQGDIRVAS
FNVLNLFTSD SDIGGPLNPM CKDQADADAS RGCGRGAHSL EDYLLQRTKI VNAIKEMNAD
VIGLMEIENN GFSEHSSIQY LLNAINAELP AADAYAFIEV NDADKYKGEF IGSDAITVGL
LYRPSTVKPT GDAFVIATPE QHSVAGVATR DNNGTVEESP SYDKYQRHSL AQTFQIHDEK
LTVVVNHLKS KGSGCLEDWL EFSESKDPAD LQGKCNEFRV SAAKVLGESL KDVEGGLLVI
GDMNAYGMED PVAVLTDYDA STAKREIVTA SWTTLNGEVY EREGSKIDKG YGLVNLNTQA
HGPATFGYSY SGELGNLDHA LANTQVADKL VGIEDWNINS VESDLFEYPS KYSGDLAKSE
NAFSSSDHDP VIIALEYPAP IPPKPEPTPK DDGGSLGYLG LALLSLLGLR RKTR
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