| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3881 |
|---|
| Symbol | |
|---|
| ID | 6118230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4730054 |
|---|
| End bp | 4731496 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635443 |
|---|
| Product | catalase |
|---|
| Protein accession | YP_001762234 |
|---|
| Protein GI | 170728208 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0753] Catalase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000327701 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000338063 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA AGTTGACCAC TGCGTTTGGC GCACCGGTAC CCGACAACCA AAATGTGAAA
ACCGCGGGTA AACGCGGACC TATGCTACTT GAGAACGCTT GGTTTATTGA AAAGTTAGCC
CATTTTGACC GCGAAGTGAT CCCTGAGCGT CGTATGCATG CTAAAGGTTC AGGTGCATTC
GGCCGTTTTA CGGTAACCCA TGATATTAGC GAATTTACTA AGGCCAAGTT ATTTGAGTCT
GTAGGTAAAG AGACTGAAGT TTTTGTTCGC TTCTCGACGG TAGCTGGTGA ACGTGGTGCT
GCTGATGCTG AGCGTGATAT CCGCGGTTTT GCAATCAAGT TCTATACCGA GCAAGGTAAC
TGGGATCTCG TGGGGAATAA CACCCCTGTT TTCTTCCTTA AAGATCCACT TAAGTTCCCA
GATCTTAACC ATGCGGTGAA GCGCGATCCA TATACCAATA TGCGCAGTGC TAACAACAAC
TGGGACTTCT GGACTCTATC GCCTGAGGCG CTACATCAGA TCACAATGAC GATGGGCGAT
CGTGGGATCC CTAAGACTTA CCGTCATATG GATGGTTTCG GTTCTCATAC ATACAGCTTT
ATCAGCAAAG ATGATAAGCG CTACTGGGTG AAGTTCCATT TTAAAACTCA GCAAGGTATT
CAGAATCTGT CAGATAAAGA AGCGGCAGAG ATCATCGCTA ATGACCGTGA GAGTCATCAA
GCGGACCTAT TGAACTCAAT CGATAAGGGT GATTTTCCTA AATGGACTCT CTATGTCCAG
TTGATGGAGG AGACTGCGGC TGGTGATTGT CCGTTCAACC CGTTTGATCT GACCAAGGTT
TGGCCACATA AAGATTATCC GCTAATTCAG GTGGGTGAGC TTGAGCTTAA CCGTAATCCA
GATAACTATT TTGCCGAAGT TGAGCAGGCG GCATTTGCCC CAACAACTAT CGTACCTGGT
ATCGGTTTCT CACCGGATAA GATGTTGCAG GGACGTCTGT TCTCTTACGG TGATAGCCAG
CGCTATCGTT TAGGGGTGAA CCACAGTCAT ATTCCGGTTA ACGCACCTAA ATGTCCGTTC
CACTCCTACC ACAGAGATGG ACAGATGCGT ACCGATGGCA ATGCTGGCCG CACCATAGGC
TATGAGCCAA ACACTCAGAG CCAATGGCAG GAGCAACCAG ACTTTAGCGA GCCACCACTA
CAGATAGATG GTGATGCGGA TGCTTATAGC CATAAAGATG ATGATCACTA CAGCCAAGCT
GGTGACCTAT TCAGATTAAT GGGTAGCGAT GAGCAGCAGA GATTGTTTGC TAATACGGCG
GCCTCAGTAG GCGGCGCTGA TAGACATATT CAGATAAGAC ACATACAGAA TTGTATGAAA
GCTGATGTGG CATACGGTGA AGGTCTAGCT AAGGTATTAG GAATTAGCGC TGACGAGCTA
TAA
|
|---|
| Protein sequence | MDKKLTTAFG APVPDNQNVK TAGKRGPMLL ENAWFIEKLA HFDREVIPER RMHAKGSGAF
GRFTVTHDIS EFTKAKLFES VGKETEVFVR FSTVAGERGA ADAERDIRGF AIKFYTEQGN
WDLVGNNTPV FFLKDPLKFP DLNHAVKRDP YTNMRSANNN WDFWTLSPEA LHQITMTMGD
RGIPKTYRHM DGFGSHTYSF ISKDDKRYWV KFHFKTQQGI QNLSDKEAAE IIANDRESHQ
ADLLNSIDKG DFPKWTLYVQ LMEETAAGDC PFNPFDLTKV WPHKDYPLIQ VGELELNRNP
DNYFAEVEQA AFAPTTIVPG IGFSPDKMLQ GRLFSYGDSQ RYRLGVNHSH IPVNAPKCPF
HSYHRDGQMR TDGNAGRTIG YEPNTQSQWQ EQPDFSEPPL QIDGDADAYS HKDDDHYSQA
GDLFRLMGSD EQQRLFANTA ASVGGADRHI QIRHIQNCMK ADVAYGEGLA KVLGISADEL
|
|---|
| |