| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3851 |
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| Symbol | |
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| ID | 6118200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4696256 |
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| End bp | 4696855 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635413 |
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| Product | membrane lipoprotein lipid attachment site |
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| Protein accession | YP_001762204 |
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| Protein GI | 170728178 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.160992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTAAAA AGTCACTTGT CGTTGCCTTG GCATTATTGC CGCTTACAGC TTGTCAAACT
ACAACCAGCT ATATCGATGC ACAGGATAAA GCAACGAATG TTGTTGCGGC ATTATCTTAT
GCCGACTTTA AAGAAGCTGC GGACTCTATG GCCACTGAGT TAATAGCCAG TCCTTTGATG
GTGCACCCTG AACCTAGGGG AAGATACATC ATCCATATCA GTGATGTGAC TAACGACACC
ATGCAGCGAA TTGACACCGA TCAGCTGGTG AAGTCTATGC GTGTGAAAAT GCTTAATTCG
GGCAAGTTTC TGGTCACTAC AGCATTTAAT GGAGAGGACT CCTCTACCCG TGAAATGCGT
AAGTTGAAAG ACTCTAAAAT GGTCAATCAA GCAAGCGTTA AGGGTGACGG TCAGGTTTAT
GCCCCTGATT TCAGCCTTTC TGGAAAGATC ATGCAACGAA ATGCATCGCT AGACAGCGGC
GATACCAGAA TTGAGTACTA CTTCCAACTC TCAATGACCA ATATCGAAAA TGGTTTAGCC
TATTGGGAAG GTGAACGTGT GGTCGGTAAA GTTGCCGACG GTGACAGCGT TTCTTGGTAA
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| Protein sequence | MFKKSLVVAL ALLPLTACQT TTSYIDAQDK ATNVVAALSY ADFKEAADSM ATELIASPLM
VHPEPRGRYI IHISDVTNDT MQRIDTDQLV KSMRVKMLNS GKFLVTTAFN GEDSSTREMR
KLKDSKMVNQ ASVKGDGQVY APDFSLSGKI MQRNASLDSG DTRIEYYFQL SMTNIENGLA
YWEGERVVGK VADGDSVSW
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