| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3822 |
|---|
| Symbol | |
|---|
| ID | 6118171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4658896 |
|---|
| End bp | 4659387 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641635385 |
|---|
| Product | putative V10 pilin |
|---|
| Protein accession | YP_001762176 |
|---|
| Protein GI | 170728150 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTACGGC ATGACAATGG GTTTACCTTA ATCGAGCTTG TGGTAGTTAT CATCATATTA
GGGGTTTTAA GTGTTATTGC TGCGCCTAAA TTTATCTCTT TAAATAAAGA TGCCAAAGTG
GCTGTTCTTG AGGGAGCCAG AGGAGCGCTG TCGACTGCGA ATAGCTTTAG TTACTCTAAG
GCTGCATTGC AAGGTCAAGA GTTGGTGGAT GCTAGCTCAG CAAATATCGA TATGGACAGT
GATGGGACTG CGGATTTAAT TGGTTATTAT GGCTTAATTA AGTTTGTTAT CTCAGCTAAA
GAGTACGCTG GTTTAGATGA GGACTTAACA ATTAGCAAGC ATTATGGTGG CTCAGGTCCT
ACTCTCCCTT ATTTCCTTAT CTCCTTTACC GATAATCCTG CTTCTGCAGT GACTCAATGT
TTTCTATCAG TCTATTATCC AGATACTGCT GGCGGTAGTG TCACCTATGA GTTCGTCACA
GAAGATTGTT AG
|
|---|
| Protein sequence | MLRHDNGFTL IELVVVIIIL GVLSVIAAPK FISLNKDAKV AVLEGARGAL STANSFSYSK
AALQGQELVD ASSANIDMDS DGTADLIGYY GLIKFVISAK EYAGLDEDLT ISKHYGGSGP
TLPYFLISFT DNPASAVTQC FLSVYYPDTA GGSVTYEFVT EDC
|
|---|
| |