| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3792 |
|---|
| Symbol | |
|---|
| ID | 6118141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4628139 |
|---|
| End bp | 4630511 |
|---|
| Gene Length | 2373 bp |
|---|
| Protein Length | 790 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641635355 |
|---|
| Product | penicillin-binding protein 1B |
|---|
| Protein accession | YP_001762146 |
|---|
| Protein GI | 170728120 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.692226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000907679 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA AAGAGACTTC AAAGAAACCT GCGCGTAAAA AAGCGGCTCC TAAATCTGGA
GCGAAAAAGC CAGCAGCCAA AAAGCGTGCA GCCAAAGCAA AGAGTGCCAG TAAAGGCTCA
CCAAGTATAG GCAGACGGAT CTGGTCTATC AGCTGGAAGC TAGGCCTGAT CTTATTTGTA
GGCGTGTTGA GCTACGGCAT CTACCTAGAT CAAGTAATAG CTCGAAAATT TGAGGGGCAG
AAATGGCACC TACCTGCTCA AGTGTTTAGC CGCTCAATGG CCCTTTATCC TGGCGCAGCT
GTGAGTCACG GTCAGTTAAT TGCTGAATTA AAATTGCTGG GTTATCGCAA AGTGGCTAAC
CCAAGGCAAG TGGGTGAGTT CTCTGCATCT AAAACTCGGG TAGATTTGTG GCGTCGTCCC
TTCCTGCATC CTCAAGGAGC CCAAGCTGAG CAGAGGGTTA TGATCACTTT TGATCAACAA
GGGGTAAGTT CGGTAGCAAG GAACACAGAT AATCGTCAGT TAGCGGTTTT TCATCTCGAA
CCTGTGCTGC TTGACCGTAT TATTACTGGC GATGGAGAAG ATCGTCTGTT TGTCCCGACC
ACTAAGATGC CTCAGTCTAT TATCGACTCA CTGATCTTGG TGGAAGATCG CAGCTTCTAT
GAACATCATG GCGTAAATCC GTTTGCCATT ATTCGTGCCG CACTGGTGAA TATCAGTGCG
GGGCGCACAG TGCAGGGGGG CTCAACGTTA ACGCAACAGC TGGCGAAAAA CTTCTTCCTC
TCCAGTGAGC GCTCGTTAGT GCGGAAAATT CGGGAAGCCT TGATGGCGAT AATCATCGAT
TTTCGCTATG AAAAGGACGA AATATTAGAG GCTTATCTTA ATGAAGTGTA CATGGGACAA
GATAAAGCCC GTGGAGTACA TGGTATGGGA CTGGCCTCTC AGTTCTATTT CGGTCGTCCC
ATTGCTGAGT TAACTTTGCC GCAGCAAGCA TTCTTGGTCG CTGTGATAAA GGGCCCCTCT
TACTACAACC CTTGGCGCTA TCCTGAGCGG GCTGCAAGCC GCCGCGATCT AGTGCTACGC
CTCTTGATGG AGGACGGTAA GCTTAATGTG CAGCAGTATA CTGCTGCCGT TGAGTCGCCT
TTAGGTCTTC GAAGTGCCGA CAAACCTGTC CATCAAAAGC TGCCTGCATT TTTCGCCGTG
GTTCAGCATG AGCTTAACAG ACGCTTTGGC GACTCTTTGT TAAAACAGTC GGGTATTAAG
GTCTATACAA CGCTGGATCC TATGGCGCAG GAAGCGGCTG AAAAAGCGGT GAAAAAGACC
ATGGCCCGTC TAGGAAAAAA TGACAAGATA TTGCAAGTGG GTATGGTGGT TACCGATAAA
TATTCGGCAG GTATAGCAGC CATGGTGGGG GATAAAGTGC CGAGTTATAA AGGCTATAAC
CGCGCTGTAG AGATCAGGCG TCCAATCGGC TCACTAGTCA AACCTTTTGT CTATGCGACC
GCGTTGAATC AACCTGCTAA ATATACTTTA GCGACGCCAC TTAAGGATCA ACCTATTACC
CTGAACAACG GCCATGGTAA GACCTGGTCA CCTAAGAATG TGGATAAGAA GTTTAGAGGT
GAAGTACCAC TATTGACCGC CTTTAAGAGG TCAATTAACG TACCTACGGT CAATTTAGGT
ATGGAGATGG GGGTCAGCAG TGTGGCGACC ACGCTCGATA AATCTGGCTG GAGAGATAAA
ATAAGTGAAT ATCCCTCTAT GCTGTTAGGT GCTGTTAATG GCTCACCGCT GATGGTCGCT
CAGGTCTATC AAACCATAGC GGACAACGGG CGTTATCGCC GTTTATCATC GGTGACGGCT
GTGCTGGATA TGGAGAATAA CCCTCTGCCT GTGGCGCGTG TTGAGCAGGA TCAAGCATTG
AATCCAAGCT CCACCTATCT GGTGCAATAT GCCATGACCC AAGTGGTTAA ATCCGGTACG
GCAAGCAGGC TTGGAAAGGC CTTCCCCTAT GTGACCTTGG CAGGTAAAAC TGGGACCAGT
AATGACTCCC GCGACTCCTG GTTTGCTGGA TTTGATGAGC GTAATGTCGC TGCCATCTGG
GTTGGACGTG ATGACAACGG TAAAACAGGT CTTTATGGCA GTAGTGGCGC CATGGCTGTC
TATCAAGACT TTCTCGGTAC TCGACCACCA ATCAGTCTAA GACGCCCTTT AATCAGTGGG
GTGGTCAATG GCCACTTTGA CAAAACAACC GGTGTTGCTA AAGAGGCGGG CTGTGAAAAC
TCTATCGCAC TGCCTGCATT GGAAGCCAGT TATCATCCCG CTAGAAACTG CGGTGAACCT
TTGTCTTGGT GGCAGAAGTT GACTGGAGGT TAA
|
|---|
| Protein sequence | MTDKETSKKP ARKKAAPKSG AKKPAAKKRA AKAKSASKGS PSIGRRIWSI SWKLGLILFV
GVLSYGIYLD QVIARKFEGQ KWHLPAQVFS RSMALYPGAA VSHGQLIAEL KLLGYRKVAN
PRQVGEFSAS KTRVDLWRRP FLHPQGAQAE QRVMITFDQQ GVSSVARNTD NRQLAVFHLE
PVLLDRIITG DGEDRLFVPT TKMPQSIIDS LILVEDRSFY EHHGVNPFAI IRAALVNISA
GRTVQGGSTL TQQLAKNFFL SSERSLVRKI REALMAIIID FRYEKDEILE AYLNEVYMGQ
DKARGVHGMG LASQFYFGRP IAELTLPQQA FLVAVIKGPS YYNPWRYPER AASRRDLVLR
LLMEDGKLNV QQYTAAVESP LGLRSADKPV HQKLPAFFAV VQHELNRRFG DSLLKQSGIK
VYTTLDPMAQ EAAEKAVKKT MARLGKNDKI LQVGMVVTDK YSAGIAAMVG DKVPSYKGYN
RAVEIRRPIG SLVKPFVYAT ALNQPAKYTL ATPLKDQPIT LNNGHGKTWS PKNVDKKFRG
EVPLLTAFKR SINVPTVNLG MEMGVSSVAT TLDKSGWRDK ISEYPSMLLG AVNGSPLMVA
QVYQTIADNG RYRRLSSVTA VLDMENNPLP VARVEQDQAL NPSSTYLVQY AMTQVVKSGT
ASRLGKAFPY VTLAGKTGTS NDSRDSWFAG FDERNVAAIW VGRDDNGKTG LYGSSGAMAV
YQDFLGTRPP ISLRRPLISG VVNGHFDKTT GVAKEAGCEN SIALPALEAS YHPARNCGEP
LSWWQKLTGG
|
|---|
| |