Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3791 |
Symbol | |
ID | 6118140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4626842 |
End bp | 4628011 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641635354 |
Product | sugar efflux transporter |
Protein accession | YP_001762145 |
Protein GI | 170728119 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0663735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000695018 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAACAGC GCCTAATCGC CTGGGCACCT GTATTTTTAC TGGCACTCAC CGCTTTTGTT TTTGTCTCCA CAGAGTTTGT TCCTGTGGGG CTTCTGGCCG CTCTTGGCCA GAGTTTTGGT ATGAGCGCGA TTGAAGTTGG CCCTATGCTA ACGGCCTATG CCAGCGTTGT CGCACTTGCA TCTTTACCTG CTGTACTGCT GTTTGCGCGA TTTGAACGTA AAAAGTTACT ACTTGGGTTA ATGTCAGTCT TTATCGTCAG TCACGGCATC TGTGTCTGGG CCCCAAGTTA TGAGATCCTT CTATCAGGTC GTGTCGGCAT CGCTTTCACT CATGCACTGT TCTGGGCAAT AGCCCCTGCC CTCGTCGTGC GACTCGCCCC TAATGGACAA GGTCCACAAG CCCTGAGCAT CTTCGCAACA GGCTGTGTTT TGGCGCTTGT ACTTGGTATT CCCCTAGGAC GAGTGATTGG ACAGTTAGTT GGATGGCGCA CTATTTTTGC TTTAATCGGC TTACTCACAT TAATCATGAT GTTACTGCTT TGGCGCGGGC TGCCAACACT GCCTGCAACC CATGGCGGTA GCTGGCGTAG TCTGCCCGCT TTAGTACGTA ATAAGGCACT GCTCTGGCTA TACTTACTCA CCATAGTGTT AGTAACAGCC CACTACAGTG TTTATACCTA CTTAGAGCCT TTACTGCAGG AACACTTTGG GTATTCAGCG AATATCACTA CCATGATTTT GCTTATCTTT GGTGCTGCAG GATTAATTGG TAGTGCGCTT TTTAGTCGCT ACCAAGCACG TCATGCTCAA CAGCTATTAA CCCTAGCTAT CCTCTCTTTA GGTAGCTGCA TGGCAATCTT GCCATTTATT GCAAACCAGA TCTGGTTACT GCTGCCTTTG TCTATTTTAT GGGGAGCAGG CATGATGCTG ATGTGCCTGT CACTGCAATC AAAAGCACTG AAGCTGGCGC CTAATGCTAC CGATGTCGCC ATGGCGATCT ACTCAGGCTT ATTTAATGTA GGAATTGGCG GTGGTGCGCT ATTGGGCAGT ATCATAGCAG CAAGATATGG CGTCGTAGAA AATGGTAACT GGGCAAGTAT CTTAGTTCTC CTTGCTAGTG TGCCTCTGTT TTACCTGCTT AAAGCACGGC GACAAGAGAT GGCTCATTAA
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Protein sequence | MKQRLIAWAP VFLLALTAFV FVSTEFVPVG LLAALGQSFG MSAIEVGPML TAYASVVALA SLPAVLLFAR FERKKLLLGL MSVFIVSHGI CVWAPSYEIL LSGRVGIAFT HALFWAIAPA LVVRLAPNGQ GPQALSIFAT GCVLALVLGI PLGRVIGQLV GWRTIFALIG LLTLIMMLLL WRGLPTLPAT HGGSWRSLPA LVRNKALLWL YLLTIVLVTA HYSVYTYLEP LLQEHFGYSA NITTMILLIF GAAGLIGSAL FSRYQARHAQ QLLTLAILSL GSCMAILPFI ANQIWLLLPL SILWGAGMML MCLSLQSKAL KLAPNATDVA MAIYSGLFNV GIGGGALLGS IIAARYGVVE NGNWASILVL LASVPLFYLL KARRQEMAH
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