Gene Swoo_3791 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3791 
Symbol 
ID6118140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4626842 
End bp4628011 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content48% 
IMG OID641635354 
Productsugar efflux transporter 
Protein accessionYP_001762145 
Protein GI170728119 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0663735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000695018 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACAGC GCCTAATCGC CTGGGCACCT GTATTTTTAC TGGCACTCAC CGCTTTTGTT 
TTTGTCTCCA CAGAGTTTGT TCCTGTGGGG CTTCTGGCCG CTCTTGGCCA GAGTTTTGGT
ATGAGCGCGA TTGAAGTTGG CCCTATGCTA ACGGCCTATG CCAGCGTTGT CGCACTTGCA
TCTTTACCTG CTGTACTGCT GTTTGCGCGA TTTGAACGTA AAAAGTTACT ACTTGGGTTA
ATGTCAGTCT TTATCGTCAG TCACGGCATC TGTGTCTGGG CCCCAAGTTA TGAGATCCTT
CTATCAGGTC GTGTCGGCAT CGCTTTCACT CATGCACTGT TCTGGGCAAT AGCCCCTGCC
CTCGTCGTGC GACTCGCCCC TAATGGACAA GGTCCACAAG CCCTGAGCAT CTTCGCAACA
GGCTGTGTTT TGGCGCTTGT ACTTGGTATT CCCCTAGGAC GAGTGATTGG ACAGTTAGTT
GGATGGCGCA CTATTTTTGC TTTAATCGGC TTACTCACAT TAATCATGAT GTTACTGCTT
TGGCGCGGGC TGCCAACACT GCCTGCAACC CATGGCGGTA GCTGGCGTAG TCTGCCCGCT
TTAGTACGTA ATAAGGCACT GCTCTGGCTA TACTTACTCA CCATAGTGTT AGTAACAGCC
CACTACAGTG TTTATACCTA CTTAGAGCCT TTACTGCAGG AACACTTTGG GTATTCAGCG
AATATCACTA CCATGATTTT GCTTATCTTT GGTGCTGCAG GATTAATTGG TAGTGCGCTT
TTTAGTCGCT ACCAAGCACG TCATGCTCAA CAGCTATTAA CCCTAGCTAT CCTCTCTTTA
GGTAGCTGCA TGGCAATCTT GCCATTTATT GCAAACCAGA TCTGGTTACT GCTGCCTTTG
TCTATTTTAT GGGGAGCAGG CATGATGCTG ATGTGCCTGT CACTGCAATC AAAAGCACTG
AAGCTGGCGC CTAATGCTAC CGATGTCGCC ATGGCGATCT ACTCAGGCTT ATTTAATGTA
GGAATTGGCG GTGGTGCGCT ATTGGGCAGT ATCATAGCAG CAAGATATGG CGTCGTAGAA
AATGGTAACT GGGCAAGTAT CTTAGTTCTC CTTGCTAGTG TGCCTCTGTT TTACCTGCTT
AAAGCACGGC GACAAGAGAT GGCTCATTAA
 
Protein sequence
MKQRLIAWAP VFLLALTAFV FVSTEFVPVG LLAALGQSFG MSAIEVGPML TAYASVVALA 
SLPAVLLFAR FERKKLLLGL MSVFIVSHGI CVWAPSYEIL LSGRVGIAFT HALFWAIAPA
LVVRLAPNGQ GPQALSIFAT GCVLALVLGI PLGRVIGQLV GWRTIFALIG LLTLIMMLLL
WRGLPTLPAT HGGSWRSLPA LVRNKALLWL YLLTIVLVTA HYSVYTYLEP LLQEHFGYSA
NITTMILLIF GAAGLIGSAL FSRYQARHAQ QLLTLAILSL GSCMAILPFI ANQIWLLLPL
SILWGAGMML MCLSLQSKAL KLAPNATDVA MAIYSGLFNV GIGGGALLGS IIAARYGVVE
NGNWASILVL LASVPLFYLL KARRQEMAH