| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3778 |
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| Symbol | |
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| ID | 6118127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4605801 |
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| End bp | 4607183 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641635341 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001762132 |
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| Protein GI | 170728106 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.916933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00524382 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTTAG CCAGAAACAT TTTACTAGTC GACGATGAAG CTTCATGGTT AAGAACCCTT
GCTCTAACAT TAAACCGCCT CGTGCCGGAA GCACAGGTCG ATACCTGTAT CGATAGCAGA
CAAGTTATTG ACCGTTTATC GGTAGAGGAG TACGCCTTAG TCTTGCTCGA TCTAACCATG
CCGTTCCACT CTGGAGAGAC ACTGCTGGAG ATGATCCGCA CTAGCTTTCC TAAGACAAGA
GTCATTATCG TCACTGGCGT AAATGAGGTC GATACCGCGG TTCGCTGCAT CAAAAATGGC
GCCTATGATT ACTTTATCAA AACTGACAAA GTGGAAGACT TAGCAAGAAC CGTGCGTCGT
GCACTTGAGG TTGTTGGATT AGAGCGGAAC TACCTACGTA TTAAGGAGCG CTTTTTAAGC
CGGACTCTTG CCCAGCCCGA AGCCTTCAAT AATATCTTAA CCTGTGAACC AGTCCTACTC
GATCAGTTTC GCTACCTTGA GGCAGTCGCC CAGAGCCCAG AACCCATCCT TATTCAGGGT
GAAAGTGGAA CCGGTAAAGA TGAATTTGCA CAGTCTTGCC ACCAACTCTG CTGCAGTAAG
GCGCCCTTTA TCAATATCAA CTTGGCAGGT CTCAGCACTC AAGCATTTGA GCTGCAGCTA
TTTGGTCAGA TACACACTCA AGAGGATGGC CAGATCTCAG CACAAGCTGG CGTTCTACAT
CAAGTGGGAG AAGGGATGCT CTACTTAAAT GAGATAGCAG AACTCCCCCT TGAAGCCCAA
GCAAAATTGG TCGATGTAAT TGAGCATAAA CAATACTACC CTATTGGCAG TGATCGCTCC
TATCCAGTAA AGTGCAAAAT CATCACCTCG ACTCAAAATG ATCTGATTGC TCTTAACAAG
TTAGGGAAGT TTCGCAGTGA TCTACTCTAC CGACTCTGCT CACACAAGAT TAAACTTCCT
CCACTAAGGG AGCGCAAACT CGATCACTCT ATGCTAATCA ACCACTTTAT TGATAGGGCA
GCGAAAGAGA TGGGGTTAGA GAGCCCACTT CAGCCCACGA ATCTAGCACG ACAGCTAGCA
GACTATGACT TTCCTGGAAA CCTACATGAA TTAAAAGGCA TGGTGTTCGA CAGTGTCAGT
CGCAGTGATG GTGTTCAGCT CAACATCACC CCCTTTATGG AAGCGATTAA TGAACAAAGA
GGAGGGGTGG GCACATCCGA GAGCAAAATA GTCTTTCCAA AAACACTGCC TACACTGGCC
GAGATCAGTA ACACGTTAAT CCAAGAAGCG ATGAGCCGCA CAGCAAACAA CCAAACAGCC
GCAGCTCAGA TGCTGGGAAT AAGCCAAAGT GCATTAAGTC GAAGGCTTAC CAAGGAGAAT
TAA
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| Protein sequence | MKLARNILLV DDEASWLRTL ALTLNRLVPE AQVDTCIDSR QVIDRLSVEE YALVLLDLTM
PFHSGETLLE MIRTSFPKTR VIIVTGVNEV DTAVRCIKNG AYDYFIKTDK VEDLARTVRR
ALEVVGLERN YLRIKERFLS RTLAQPEAFN NILTCEPVLL DQFRYLEAVA QSPEPILIQG
ESGTGKDEFA QSCHQLCCSK APFININLAG LSTQAFELQL FGQIHTQEDG QISAQAGVLH
QVGEGMLYLN EIAELPLEAQ AKLVDVIEHK QYYPIGSDRS YPVKCKIITS TQNDLIALNK
LGKFRSDLLY RLCSHKIKLP PLRERKLDHS MLINHFIDRA AKEMGLESPL QPTNLARQLA
DYDFPGNLHE LKGMVFDSVS RSDGVQLNIT PFMEAINEQR GGVGTSESKI VFPKTLPTLA
EISNTLIQEA MSRTANNQTA AAQMLGISQS ALSRRLTKEN
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