| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3752 |
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| Symbol | |
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| ID | 6118101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4565829 |
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| End bp | 4567124 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635315 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001762106 |
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| Protein GI | 170728080 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.472019 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGGTT TAGCGCTCTT TATTATCGCG ATGATCGCCA TCTTCTTTGG CTTCCCCATT
GCATTTACCT TTGCTGGCGT CTCTATGGCT ATCGGGATCT TAGTGCTCGG CATCGATCTA
TTCGCATTTA TGCCATTTAG AATTATGAGC ACGATGCAAA ACACCATTTT GATGGCAGTT
CCCCTGTTTA TCTTTATGGG GATCGTATTG CAGAAGACTA ATTTGGCTGA AGAGCTGCTT
GAGTCCATGG GGAAACTTTT TGGAGGACTT AAAGGCGGTT TGGCAATATC GACCATCATT
GTCGGCCTAT TTTTAGCGGC ATCTACGGGA GTGGTTGGCG CCAGTGTGGT TGCCATGGGG
GTAATATCCC TGCCAGTGAT GCTCAAGCAT AGATATGATC CGAAATTAGC CACAGGCATT
ATTTGTGCAG CAGGCACTTT AGGTCAAATC GTTCCCCCTT CGATTATCTT AATCATCCTC
GGAGATGTAA TGGGACTGCC TGTTGGCGAT CTGTTCACCG CAGCACTTCT GCCCTCCTTG
ATACTGGTGA GTGCTTATCT CATCTATATC TTAGCCATAG TCAACATCAA ACCCAGTATT
GCACCGCCCA TAAAAAATGA GCTTGATGAG CCTAACCTGA CCATGGTTAT CAAGTGCTTG
AAACTGATTA TTCCACCGCT ATTTCTCATC GTTGCGGTTT TGGGCTCTAT CTATTCAGGA
CTGGCAACTC CCACAGAGTC TTCCGCTCTG GGTGGCGTTG GCGCCCTATT GCTGGCACTC
ATCTATAGCA AGTTCAAGTT CAAACTCCTT TTTGACAGCG CACTAGAAAC CGTCAAGGTC
TCCTCTATGG TGTTTGCCGT GCTTATCGGC GCCACAGCAT TTTCTATGGT GTTTAGCTAT
AGCGGAGGAG AGTCCATCGT TGAGGAGTTT TTTGTCTCGT TGCCAAACGC CCAATGGACA
TTTGTACTTA TCGCCATGCT CACCATTTTT ATCTTAGGTT TCTTCATCGA TTTCATTGAG
ATCGCCTTCA TCATAGTGCC AATTTTGACC CCGATAGCCC TCTCGTTGGG ACTCAATATG
AACTGGCTCG CCATTCTTAT CGCCATGAAC CTACAAACCT CATTTTTAAC GCCCCCCTTT
GGCTTCAGTC TGTTTTACCT CAAGGGAGTC GCGCCACCAC AAATTAAGAC ATTAGCGATC
TACAAAGGGG TGCTGCCCTT TATCGCCATA CAGATGTTAA TTCTGGCTCT TCTCGTTTTC
TTCCCAGAAC TATTTGGCCT TAGTCGATTG AGTTAA
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| Protein sequence | MTGLALFIIA MIAIFFGFPI AFTFAGVSMA IGILVLGIDL FAFMPFRIMS TMQNTILMAV
PLFIFMGIVL QKTNLAEELL ESMGKLFGGL KGGLAISTII VGLFLAASTG VVGASVVAMG
VISLPVMLKH RYDPKLATGI ICAAGTLGQI VPPSIILIIL GDVMGLPVGD LFTAALLPSL
ILVSAYLIYI LAIVNIKPSI APPIKNELDE PNLTMVIKCL KLIIPPLFLI VAVLGSIYSG
LATPTESSAL GGVGALLLAL IYSKFKFKLL FDSALETVKV SSMVFAVLIG ATAFSMVFSY
SGGESIVEEF FVSLPNAQWT FVLIAMLTIF ILGFFIDFIE IAFIIVPILT PIALSLGLNM
NWLAILIAMN LQTSFLTPPF GFSLFYLKGV APPQIKTLAI YKGVLPFIAI QMLILALLVF
FPELFGLSRL S
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