Gene Swoo_3730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3730 
Symbol 
ID6118079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4544232 
End bp4544924 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content45% 
IMG OID641635294 
Productpseudouridine synthase 
Protein accessionYP_001762085 
Protein GI170728059 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.754242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGTTTAG ACAAATATAT CTGCGAGTCG ACTTCACTTA CCCGCTCTTT AGCGAAGAAA 
GCGCTACATC GAGGTGATGT GACCTGTGAT GGTAAGGTCA TTAAAGATTC GGGGTTTAAA
GTAACCGATA AGCAGGTGAT CTGTTTAGAG GGGGAGCCGT TAAGTGTGAT AGGTCCACGC
TTTATTATGC TAAATAAACC CCTTGATACG ATCTGCTCGA CCATAGATGA GGAGTATCCT
TCGGTCTTAG GTTTACTCGA TGTGGTTAAA GCTGACGAAC TGCATATCGC AGGTCGCTTG
GATGTGGACA CCACAGGGCT TGTATTGATC ACCAATGACG GTCAATGGTC CCACAAGATA
ACCTCTCCTA AGAAAGAGTG CGGTAAACGC TACCTTTTAG AAACAGCTGA ACCACTAAAA
CAGGAGTGGG TGGAGGAGTT TGCCGCAGGT CTTCAATTGA ATAATGAAGA TGGCTTAACT
AAACCTGCTA CTTTGGAGAT TTTAGGTTCT CATCAAGCAC GCCTAACTAT CACTGAAGGT
AAGTACCACC AAGTTAAGCG TATGCTGGCA GCTGTAGGCA ACTGTGTTAC TCAACTGCAT
CGTGAAAGTG TAGGGGAGAT AGAGTTGGAT GAATCTCTTG CTTCTGGTGA GTGGCGCTAT
TTAACGGAAG CTGAGATAAA ATCGGTTCGT TAA
 
Protein sequence
MRLDKYICES TSLTRSLAKK ALHRGDVTCD GKVIKDSGFK VTDKQVICLE GEPLSVIGPR 
FIMLNKPLDT ICSTIDEEYP SVLGLLDVVK ADELHIAGRL DVDTTGLVLI TNDGQWSHKI
TSPKKECGKR YLLETAEPLK QEWVEEFAAG LQLNNEDGLT KPATLEILGS HQARLTITEG
KYHQVKRMLA AVGNCVTQLH RESVGEIELD ESLASGEWRY LTEAEIKSVR