Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3730 |
Symbol | |
ID | 6118079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4544232 |
End bp | 4544924 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635294 |
Product | pseudouridine synthase |
Protein accession | YP_001762085 |
Protein GI | 170728059 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.754242 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGTTTAG ACAAATATAT CTGCGAGTCG ACTTCACTTA CCCGCTCTTT AGCGAAGAAA GCGCTACATC GAGGTGATGT GACCTGTGAT GGTAAGGTCA TTAAAGATTC GGGGTTTAAA GTAACCGATA AGCAGGTGAT CTGTTTAGAG GGGGAGCCGT TAAGTGTGAT AGGTCCACGC TTTATTATGC TAAATAAACC CCTTGATACG ATCTGCTCGA CCATAGATGA GGAGTATCCT TCGGTCTTAG GTTTACTCGA TGTGGTTAAA GCTGACGAAC TGCATATCGC AGGTCGCTTG GATGTGGACA CCACAGGGCT TGTATTGATC ACCAATGACG GTCAATGGTC CCACAAGATA ACCTCTCCTA AGAAAGAGTG CGGTAAACGC TACCTTTTAG AAACAGCTGA ACCACTAAAA CAGGAGTGGG TGGAGGAGTT TGCCGCAGGT CTTCAATTGA ATAATGAAGA TGGCTTAACT AAACCTGCTA CTTTGGAGAT TTTAGGTTCT CATCAAGCAC GCCTAACTAT CACTGAAGGT AAGTACCACC AAGTTAAGCG TATGCTGGCA GCTGTAGGCA ACTGTGTTAC TCAACTGCAT CGTGAAAGTG TAGGGGAGAT AGAGTTGGAT GAATCTCTTG CTTCTGGTGA GTGGCGCTAT TTAACGGAAG CTGAGATAAA ATCGGTTCGT TAA
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Protein sequence | MRLDKYICES TSLTRSLAKK ALHRGDVTCD GKVIKDSGFK VTDKQVICLE GEPLSVIGPR FIMLNKPLDT ICSTIDEEYP SVLGLLDVVK ADELHIAGRL DVDTTGLVLI TNDGQWSHKI TSPKKECGKR YLLETAEPLK QEWVEEFAAG LQLNNEDGLT KPATLEILGS HQARLTITEG KYHQVKRMLA AVGNCVTQLH RESVGEIELD ESLASGEWRY LTEAEIKSVR
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