| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3710 |
|---|
| Symbol | |
|---|
| ID | 6118054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4516666 |
|---|
| End bp | 4517679 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635269 |
|---|
| Product | lytic murein transglycosylase B |
|---|
| Protein accession | YP_001762065 |
|---|
| Protein GI | 170728039 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000626578 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000372275 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAAATAA TACCGACGCT TTTAGCAACA CTCCTTATGG GCACGCTATG TGCTACAGCG
CCAGTTTCTG CTCAGTCTGA CGAGACGATT GAACAAGCAG CAGATCTATT AAAATCTGAA
TTTCATGATA CCCAACGAGC TTCAGGCTTT AGCGATGCCG AGATAAACAG CTTTCTCTCT
TCCGGTCAGT TTAACCAAAG CGTAATAGAT GCCATGACCA AACCTTGGGA AGCTAAACCA
TGGCATCAGT ATTACCCTAT TTTCCTCACT GAAAAACGTC TTCAGGCTGG CTTAAAATTT
TGGAAAGAAC ATGAAGCGAC CGTTGAGCGA GCAGCTAAAG AGTTTGGTGT CGATCCACAA
ATCATCATCG CCATTATAGG TATTGAGACC TTTTATGGCG GTTATATGGG TAACTATCCA
GTTGTCGATG CCCTCTATAC ACTAGGTTTC TACTATCCAC CACGCGCTAC CTTCTTCAGA
AAAGAGCTGG GGAATCTACA GAGCCTAGCC AAAGAGGAGG GGTTAAATAT ACAAGAGCTT
AAAGGCTCTT ACGCTGGCGC CATGGGCTAT GGCCAATTTA TTCCCTCAAG TTACCGCCAC
TACGCCGTTG ATTTTGATAA TGACGGTCAG CGGGATCTGC TGAATAATCC AGTCGATGCC
ATCGGCAGTG TGGCAAACTA TTTTCATCAG CATGGTTGGG TAGCCAAAGC ACCTGTTGCC
ATTCCTTTAG CCGAAACAGA TGGACTCCCA AAGCCGTTAA AAGTCTGGGC TGGTGAGCGC
TTACATTATC AAGTCTTGGA TATTCTATCT CCGTCCCTAG CCCTAGCAGA ATCGATTGAT
CTCGATGTTT CTCAACCTGC GCTAATCATA GAGTTAGAGC AGGAAGCTAA GAGTGAGTAT
TGGCTCGGTC TCAAGAATTT TTACGTGATC ACCCGTTATA ATCGCAGCCC GCTTTATGCT
ATGGCCGTTT ACCAATTCAG CCAGCAATTA AAGAAGGCTC ACGATGCACA ATAA
|
|---|
| Protein sequence | MKIIPTLLAT LLMGTLCATA PVSAQSDETI EQAADLLKSE FHDTQRASGF SDAEINSFLS
SGQFNQSVID AMTKPWEAKP WHQYYPIFLT EKRLQAGLKF WKEHEATVER AAKEFGVDPQ
IIIAIIGIET FYGGYMGNYP VVDALYTLGF YYPPRATFFR KELGNLQSLA KEEGLNIQEL
KGSYAGAMGY GQFIPSSYRH YAVDFDNDGQ RDLLNNPVDA IGSVANYFHQ HGWVAKAPVA
IPLAETDGLP KPLKVWAGER LHYQVLDILS PSLALAESID LDVSQPALII ELEQEAKSEY
WLGLKNFYVI TRYNRSPLYA MAVYQFSQQL KKAHDAQ
|
|---|
| |