| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3696 |
|---|
| Symbol | |
|---|
| ID | 6118040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4501351 |
|---|
| End bp | 4502775 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635255 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001762051 |
|---|
| Protein GI | 170728025 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00523975 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00388366 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA AACTCCATAT TAAAACCTGG GGCTGTCAGA TGAATGAGTA TGACTCATCT
AAGATGGCTG ATCTAATGGA TGAGTATAAA GGGTACACCT TAACAGAAGA GGCTGAAGAG
GCTGATGTAC TTCTGCTAAA TACCTGTTCT ATCCGTGAAA AAGCTCAGGA AAAGGTGTTC
CATCAACTTG GGCGCTGGAA AAAACTAAAA GATAAAAACC CCAACCTTAT TATTGGTGTT
GGTGGCTGTG TCGCGTCACA AGAGGGCAAA GTGATTAAAG ATCGCGCCCA GTGTGTCGAT
CTGATTTTCG GCCCTCAAAC ACTTCACCGC CTGCCAGAGA TGATCGATCA GATCGAAGCA
GGAGGTAAAG CCGTCATCGA TGTGAGCTTC CCTGAAATCG AAAAGTTTGA CCGTCTACCA
GAACCTCGCG CTGATGGACC AAGTGCTTTT GTCTCAATTA TGGAAGGTTG CAGCAAGTAT
TGCTCTTTCT GCGTTGTGCC TTATACACGC GGTGAAGAGG TCAGTCGCCC CCTTGATGAC
GTTATTCTAG AGATAGCCCA GTTAGCTGAA CAGGGTGTGC GTGAAGTAAA CCTTTTAGGT
CAAAACGTTA ACGCATATCG CGGCGCAACT CATGATGATG AGATCTGTAC CTTTGCTGAG
TTGCTTCGCT ATGTTGCGGC AATTGATGGC ATTGATAGAC TGCGTTTTAC CACCAGCCAC
CCAATTGAGT TTACTCAAGA TATTATTGAT GTTTACGAAG ACACCCCTGA ACTGGTTAGC
TTCCTTCACC TGCCGGTTCA ATCGGGTTCA GATAGAATTT TGACCCAGAT GAAACGTGGT
CATATGGCTA TCGAGTACAA GTCTATTATT CGTCGTCTAC GCAAGGCTCG CCCAGATATT
CAGGTCAGTT CAGATTTCAT CATCGGCTTC CCTGGTGAAT CTAAGCAAGA TTTCGAAGAC
ACCATGAAGT TGATTGAAGA TGTTCAATTT GATCATAGCT TTAGCTTTAT CTACAGTGCA
CGCCCTGGTA CCCCAGCATC GGATCTGCCC GATGATGTAA CTCTTGATGA GAAGAAAGAG
CGTTTAGCTA TCTTACAAGA CAGAATAACT CAACAAGCGA TGCGCTATAG TCGTCAGATG
CTTGGCACAG TTCAGCGTAT TCTAGTCGAA GGTCCTTCGG TTAAAAATCC GATGGAGTTA
AGAGGCCGTA CAGAGACAAG TCGTGTAGTT AACTTCGAGG CCGATCCTAA GCATATTGGC
AGTTTCGTCG ATGTAGAGAT TGTAGATGTC TATACAAACT CACTAAGAGG TAACTTTATT
CGCGGCGAAG ATGAGATGGA TCTTAGACGT TCACTACGTC CGTCAGATAT TCTTGCTAAA
CATAAGAAAG ATGACGAACT AGGTGTAACT CAGTATATCC CTTAA
|
|---|
| Protein sequence | MSKKLHIKTW GCQMNEYDSS KMADLMDEYK GYTLTEEAEE ADVLLLNTCS IREKAQEKVF
HQLGRWKKLK DKNPNLIIGV GGCVASQEGK VIKDRAQCVD LIFGPQTLHR LPEMIDQIEA
GGKAVIDVSF PEIEKFDRLP EPRADGPSAF VSIMEGCSKY CSFCVVPYTR GEEVSRPLDD
VILEIAQLAE QGVREVNLLG QNVNAYRGAT HDDEICTFAE LLRYVAAIDG IDRLRFTTSH
PIEFTQDIID VYEDTPELVS FLHLPVQSGS DRILTQMKRG HMAIEYKSII RRLRKARPDI
QVSSDFIIGF PGESKQDFED TMKLIEDVQF DHSFSFIYSA RPGTPASDLP DDVTLDEKKE
RLAILQDRIT QQAMRYSRQM LGTVQRILVE GPSVKNPMEL RGRTETSRVV NFEADPKHIG
SFVDVEIVDV YTNSLRGNFI RGEDEMDLRR SLRPSDILAK HKKDDELGVT QYIP
|
|---|
| |