| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3692 |
|---|
| Symbol | |
|---|
| ID | 6118036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4497480 |
|---|
| End bp | 4498571 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635251 |
|---|
| Product | GTP-dependent nucleic acid-binding protein EngD |
|---|
| Protein accession | YP_001762047 |
|---|
| Protein GI | 170728021 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0012] Predicted GTPase, probable translation factor |
|---|
| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000468142 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.149729 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTTA AATGTGGCAT TGTAGGCTTG CCAAACGTAG GTAAATCAAC ATTATTCAAT
GCGTTAACTA AAGCGGGCAT CGAAGCGTCT AACTTCCCGT TTTGTACTAT TGAACCAAAT
ACTGGTGTTG TGCCTGTACC TGATGCTCGT TTGGATGCAT TAGCTCAGAT AGTTAACCCT
GAACGTGTGC TACCAACAAC TATGGAGTTT GTCGATATTG CAGGTCTAGT TGCTGGCGCT
TCTAAAGGTG AAGGTCTAGG AAACAAGTTC CTCGCTAACA TTCGTGAGAC GGATGCCATC
GGTCACGTTG TACGTTGTTT CGAAGATGAC AATATCGTTC ACGTTGCTAA TAAAGTTTCA
CCAGCTTCAG ATATTGAAGT GATTAACACT GAACTTGCAT TAGCGGATCT TGACTCTTGT
GAGCGTGCTA TCACTCGTCA GGCCAAACGT GCTAAAGGTG GCGACGCCGA TGCCAAGTTT
GAAGTTTCTG TACTTGAAAA GATGCGCCCA GTGCTTGATG AAGGTGACAT GCTGCGCTCT
ATGGAGCTAA GTAAAGAGGA GTTAGCTGCC GTTGCGTATC TGAACTTCCT GACGCTTAAG
CCTACTATGT ATATTGCTAA CGTTGCCGAA GATGGGTTTG AAAACAATCC ACATTTAGAT
ACCGTTCGTG AAATTGCTGC TAAAGAGAAT GCTGTTGTTG TTGCTGTTTG TGCTGCGATC
GAGTCTGAGC TTGCAGAGAT GGATGCAGAG GACCGCGAAG AGTTTATGGC TGATCTTGGT
TTGGAAGAGC CAGGCTTAGA TCGTGTTATT CGTGCCGGTT ACGACCTATT GACGCTGCAA
ACTTACTTTA CCGCTGGTGT TAAAGAGGTG CGTGCTTGGA CTGTTCCTGT TGGCGCGAGT
GCACCAAAAG CTGCTGGTGT TATCCATACC GATTTTGAGC GTGGCTTCAT TCGTGCTCAA
GTGATGGCTT ACGATGACTT CATTACTTAT AAAGGTGAAG CTGGCGCTAA GGAAGCGGGT
AAGTTAAGAG TTGAAGGTAA AACTTACATC GTTAAAGATG GCGATGTTAT GCATTTCCTA
TTTAACGTAT AG
|
|---|
| Protein sequence | MGFKCGIVGL PNVGKSTLFN ALTKAGIEAS NFPFCTIEPN TGVVPVPDAR LDALAQIVNP
ERVLPTTMEF VDIAGLVAGA SKGEGLGNKF LANIRETDAI GHVVRCFEDD NIVHVANKVS
PASDIEVINT ELALADLDSC ERAITRQAKR AKGGDADAKF EVSVLEKMRP VLDEGDMLRS
MELSKEELAA VAYLNFLTLK PTMYIANVAE DGFENNPHLD TVREIAAKEN AVVVAVCAAI
ESELAEMDAE DREEFMADLG LEEPGLDRVI RAGYDLLTLQ TYFTAGVKEV RAWTVPVGAS
APKAAGVIHT DFERGFIRAQ VMAYDDFITY KGEAGAKEAG KLRVEGKTYI VKDGDVMHFL
FNV
|
|---|
| |