Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3652 |
Symbol | |
ID | 6117986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4446730 |
End bp | 4448919 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641635203 |
Product | TPR repeat-containing protein |
Protein accession | YP_001762009 |
Protein GI | 170727983 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0372176 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0239407 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGCGTT TCTCTATTCT CATCATGCTA ATCTTATCCC TTGAGCTCTC TGCCTCAGAA AAAGCGCAGC CAAAAAGTAA TGCTAGCTGC ATCGGCTGCC ACCAACCGGA AGCTGGCCAT TGGCAACAAT CTGATCATGC TAAAGCGATG GCAATTGCAA CTGAAGCCAA TGTACTGGGC GATTTTTCCT CAGTCGACAT CAAGCACTAT AGCCAGAAAG CTCATTTTCA CCGCAAGAGT GGAAAATACT TTGCCGATAT CAGCTATGAC AAAACTGAAA AGCAGCAGGG TAAAGCTAAA CAAAGCTTTG AGGTAAAATA CAGCTTTGGC CACTACCCCT TGCAGCAGTA TCTGGTTGAG ACAGGCAAAG GAAAGCTACA GGTGTTGCCA TTTGCATGGG ACAGCCGACC AAAAACTCAA GGTGGACAGA GGTGGTACCA TAACTATCAA AATGAGGAGA TCGCTCCCAA CGACAGACTA CATTGGAGAC AACCACTACA GAACTGGAAT GGCATGTGCG CTGATTGTCA TTCTGACGGA CTCAAACGAC ACTTCTCTTT AAATGAGCAA TCTTTCGATA CCCAATGGGA TAATATCAAT GTCGGTTGCC TATCCTGCCA CGGGGATATG TCGGCCCATA GCCAAGCGCA AACAACCAAG AGTCGTAGCC CAAGTAAGTT ATCACTCCGC GATAACCCCA TGCATAGAGA CGATAAAGGA GTATGGAAAC GAAAAGTCGA GGAAAAGGTA GCCACTTGGC ACGGAGAGCC CAGAGATAAC CGCTTTATGG AAACCTGCTT CGCCTGCCAC TCCCTAAGAT CGCCACTAAC CGACGGAATA GAAGCGCAAA AGCCGTTTCT GGATCAATTC TCCCCTAGAT TTATCAATGC CCCCAGCTAT TATCCTGACG GCCAAATTAA GGAGGAGGTC TATGTGTATG GCTCCTTTAT GCAGAGCAAG ATGCAAGCTG CTGGCGTCAA CTGCCTAGAT TGCCATGATA GCCATACCAT GAAACTTAAA GCTGAAGGGA ATAATCTCTG CCTGCAGTGC CATAGCCCAG CGCACTTTAA TACTCAAGAG CACCTTCACC ACAAAGCGGG AACCGCCGGC AGCCAATGTG TCGATTGCCA TATGCCGCAA ACTCGCTATA TGGGCGTTGA TGATAGACGA GACCATAGCT TTAGTATTCC GCGCCCTACA TTGAGCAAAC AAACGAGCTC GCCTAATGCC TGTAATCGTT GCCATCAAGA TAAAGACTCC AGCTGGGCAG CTGCACAATT AAAAGATTGG TTTGGCGGTG AAAAACAGCT AGCGCCAAAC CAGCTTGCAC TCATCTCCCT TAGAGCTGGG GAGGCAATCT CCCCAATCGC CCACACAAAG ATAATCGATG ACACAAGTAT TGCAGCTATC ATCCGTGCCA GTGCAATCGA GCTACTACCT ATGACCCATG ATACCGCCAA CGTTAGCTGG TATCAGTCCC TACTCACCTC ATCAGAGCCA CTTATCCGTT TAGCTGCAGC GGAGCAAGGC TACCTGTTGC CTGATAATAT TCGAGCACAG GTACTATCCC CTTTATTAAA CGATCCACTA CGCTCTGTTC GTGTCGCAGC AGCAAGAACC CTTAGCGCTG ATACAAAGCT AAAGGCAACT CAAGAGCTAA CCTTTTCTAA TGAAGTCAGC AGTTGGCGAG GAGAGGGAAG ATTGAATCTG GCACTACAAC ATCTGGCAAT TGGCCAATGG GAGAAAGCAG AAACCCAGCT TATCGCCAGC ATTGCCACCG ACCCCTACTT CGATCCAAGC TATATTAATC TGGCAGATAT CTACCGAGCA ACCGGACAAA CCAGTAAGGC CAATAACACC TTTAAAGAGG GGCTATTACA TAACCCTAAC TCTTCGGGCC TACATTATGG ATTAGGTTTA CACCTCATCA GAGCTAAAGA TTATTTAGCT GCTGAGAAGT ACCTTGAGAA CGCAGCCACA CTAGCCCCTC AAAATGTGCA ATATCAATAT GTCTATCTGG TGGCATTAGA TCACAACGGC AAAACGACTG ACGCCTTGGA CTACCTTAAA CGATATTTCT CAAGTTATCC CGCTCATCCA CAACTTATCG ATACAGGCAT TAGCTTTGCC CGAAAACAGG GTCACTTGAG CATGCTTAAC TACCTGCAAC AGTTGAAAAA TACCAAATGA
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Protein sequence | MLRFSILIML ILSLELSASE KAQPKSNASC IGCHQPEAGH WQQSDHAKAM AIATEANVLG DFSSVDIKHY SQKAHFHRKS GKYFADISYD KTEKQQGKAK QSFEVKYSFG HYPLQQYLVE TGKGKLQVLP FAWDSRPKTQ GGQRWYHNYQ NEEIAPNDRL HWRQPLQNWN GMCADCHSDG LKRHFSLNEQ SFDTQWDNIN VGCLSCHGDM SAHSQAQTTK SRSPSKLSLR DNPMHRDDKG VWKRKVEEKV ATWHGEPRDN RFMETCFACH SLRSPLTDGI EAQKPFLDQF SPRFINAPSY YPDGQIKEEV YVYGSFMQSK MQAAGVNCLD CHDSHTMKLK AEGNNLCLQC HSPAHFNTQE HLHHKAGTAG SQCVDCHMPQ TRYMGVDDRR DHSFSIPRPT LSKQTSSPNA CNRCHQDKDS SWAAAQLKDW FGGEKQLAPN QLALISLRAG EAISPIAHTK IIDDTSIAAI IRASAIELLP MTHDTANVSW YQSLLTSSEP LIRLAAAEQG YLLPDNIRAQ VLSPLLNDPL RSVRVAAART LSADTKLKAT QELTFSNEVS SWRGEGRLNL ALQHLAIGQW EKAETQLIAS IATDPYFDPS YINLADIYRA TGQTSKANNT FKEGLLHNPN SSGLHYGLGL HLIRAKDYLA AEKYLENAAT LAPQNVQYQY VYLVALDHNG KTTDALDYLK RYFSSYPAHP QLIDTGISFA RKQGHLSMLN YLQQLKNTK
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