Gene Swoo_3652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3652 
Symbol 
ID6117986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4446730 
End bp4448919 
Gene Length2190 bp 
Protein Length729 aa 
Translation table11 
GC content47% 
IMG OID641635203 
ProductTPR repeat-containing protein 
Protein accessionYP_001762009 
Protein GI170727983 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR01905] doubled CXXCH domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0372176 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0239407 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCGTT TCTCTATTCT CATCATGCTA ATCTTATCCC TTGAGCTCTC TGCCTCAGAA 
AAAGCGCAGC CAAAAAGTAA TGCTAGCTGC ATCGGCTGCC ACCAACCGGA AGCTGGCCAT
TGGCAACAAT CTGATCATGC TAAAGCGATG GCAATTGCAA CTGAAGCCAA TGTACTGGGC
GATTTTTCCT CAGTCGACAT CAAGCACTAT AGCCAGAAAG CTCATTTTCA CCGCAAGAGT
GGAAAATACT TTGCCGATAT CAGCTATGAC AAAACTGAAA AGCAGCAGGG TAAAGCTAAA
CAAAGCTTTG AGGTAAAATA CAGCTTTGGC CACTACCCCT TGCAGCAGTA TCTGGTTGAG
ACAGGCAAAG GAAAGCTACA GGTGTTGCCA TTTGCATGGG ACAGCCGACC AAAAACTCAA
GGTGGACAGA GGTGGTACCA TAACTATCAA AATGAGGAGA TCGCTCCCAA CGACAGACTA
CATTGGAGAC AACCACTACA GAACTGGAAT GGCATGTGCG CTGATTGTCA TTCTGACGGA
CTCAAACGAC ACTTCTCTTT AAATGAGCAA TCTTTCGATA CCCAATGGGA TAATATCAAT
GTCGGTTGCC TATCCTGCCA CGGGGATATG TCGGCCCATA GCCAAGCGCA AACAACCAAG
AGTCGTAGCC CAAGTAAGTT ATCACTCCGC GATAACCCCA TGCATAGAGA CGATAAAGGA
GTATGGAAAC GAAAAGTCGA GGAAAAGGTA GCCACTTGGC ACGGAGAGCC CAGAGATAAC
CGCTTTATGG AAACCTGCTT CGCCTGCCAC TCCCTAAGAT CGCCACTAAC CGACGGAATA
GAAGCGCAAA AGCCGTTTCT GGATCAATTC TCCCCTAGAT TTATCAATGC CCCCAGCTAT
TATCCTGACG GCCAAATTAA GGAGGAGGTC TATGTGTATG GCTCCTTTAT GCAGAGCAAG
ATGCAAGCTG CTGGCGTCAA CTGCCTAGAT TGCCATGATA GCCATACCAT GAAACTTAAA
GCTGAAGGGA ATAATCTCTG CCTGCAGTGC CATAGCCCAG CGCACTTTAA TACTCAAGAG
CACCTTCACC ACAAAGCGGG AACCGCCGGC AGCCAATGTG TCGATTGCCA TATGCCGCAA
ACTCGCTATA TGGGCGTTGA TGATAGACGA GACCATAGCT TTAGTATTCC GCGCCCTACA
TTGAGCAAAC AAACGAGCTC GCCTAATGCC TGTAATCGTT GCCATCAAGA TAAAGACTCC
AGCTGGGCAG CTGCACAATT AAAAGATTGG TTTGGCGGTG AAAAACAGCT AGCGCCAAAC
CAGCTTGCAC TCATCTCCCT TAGAGCTGGG GAGGCAATCT CCCCAATCGC CCACACAAAG
ATAATCGATG ACACAAGTAT TGCAGCTATC ATCCGTGCCA GTGCAATCGA GCTACTACCT
ATGACCCATG ATACCGCCAA CGTTAGCTGG TATCAGTCCC TACTCACCTC ATCAGAGCCA
CTTATCCGTT TAGCTGCAGC GGAGCAAGGC TACCTGTTGC CTGATAATAT TCGAGCACAG
GTACTATCCC CTTTATTAAA CGATCCACTA CGCTCTGTTC GTGTCGCAGC AGCAAGAACC
CTTAGCGCTG ATACAAAGCT AAAGGCAACT CAAGAGCTAA CCTTTTCTAA TGAAGTCAGC
AGTTGGCGAG GAGAGGGAAG ATTGAATCTG GCACTACAAC ATCTGGCAAT TGGCCAATGG
GAGAAAGCAG AAACCCAGCT TATCGCCAGC ATTGCCACCG ACCCCTACTT CGATCCAAGC
TATATTAATC TGGCAGATAT CTACCGAGCA ACCGGACAAA CCAGTAAGGC CAATAACACC
TTTAAAGAGG GGCTATTACA TAACCCTAAC TCTTCGGGCC TACATTATGG ATTAGGTTTA
CACCTCATCA GAGCTAAAGA TTATTTAGCT GCTGAGAAGT ACCTTGAGAA CGCAGCCACA
CTAGCCCCTC AAAATGTGCA ATATCAATAT GTCTATCTGG TGGCATTAGA TCACAACGGC
AAAACGACTG ACGCCTTGGA CTACCTTAAA CGATATTTCT CAAGTTATCC CGCTCATCCA
CAACTTATCG ATACAGGCAT TAGCTTTGCC CGAAAACAGG GTCACTTGAG CATGCTTAAC
TACCTGCAAC AGTTGAAAAA TACCAAATGA
 
Protein sequence
MLRFSILIML ILSLELSASE KAQPKSNASC IGCHQPEAGH WQQSDHAKAM AIATEANVLG 
DFSSVDIKHY SQKAHFHRKS GKYFADISYD KTEKQQGKAK QSFEVKYSFG HYPLQQYLVE
TGKGKLQVLP FAWDSRPKTQ GGQRWYHNYQ NEEIAPNDRL HWRQPLQNWN GMCADCHSDG
LKRHFSLNEQ SFDTQWDNIN VGCLSCHGDM SAHSQAQTTK SRSPSKLSLR DNPMHRDDKG
VWKRKVEEKV ATWHGEPRDN RFMETCFACH SLRSPLTDGI EAQKPFLDQF SPRFINAPSY
YPDGQIKEEV YVYGSFMQSK MQAAGVNCLD CHDSHTMKLK AEGNNLCLQC HSPAHFNTQE
HLHHKAGTAG SQCVDCHMPQ TRYMGVDDRR DHSFSIPRPT LSKQTSSPNA CNRCHQDKDS
SWAAAQLKDW FGGEKQLAPN QLALISLRAG EAISPIAHTK IIDDTSIAAI IRASAIELLP
MTHDTANVSW YQSLLTSSEP LIRLAAAEQG YLLPDNIRAQ VLSPLLNDPL RSVRVAAART
LSADTKLKAT QELTFSNEVS SWRGEGRLNL ALQHLAIGQW EKAETQLIAS IATDPYFDPS
YINLADIYRA TGQTSKANNT FKEGLLHNPN SSGLHYGLGL HLIRAKDYLA AEKYLENAAT
LAPQNVQYQY VYLVALDHNG KTTDALDYLK RYFSSYPAHP QLIDTGISFA RKQGHLSMLN
YLQQLKNTK