| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3642 |
|---|
| Symbol | |
|---|
| ID | 6117976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4436735 |
|---|
| End bp | 4437319 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641635193 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase cyclophilin type |
|---|
| Protein accession | YP_001761999 |
|---|
| Protein GI | 170727973 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.958192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.351876 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCT TATTCAACGC CTTCATTTTA CTCTGTTTAA GCCAAAGTGC CTTAGCTGTC
GATATTCAGC CCAACACCCT CTATCCCAAA GTGCAACTTG ACACGAGTAT GGGTAAAATA
GTGGTAGAGC TCGATAGAAC CCGAGCGCCA ATCACAGTCG ATAACTTTCT CACCTATGTG
GTAAAAGGTC ACTACGATAA GACACTGTTT CACAGGGTCA TTGCCGAATT TGTTGTGCAA
GGCGGCGGAT TAGATCTTAA GCAGGAGGAG CGTCCAGTTG ACGCTCCTAT TATCAATGAG
TCTGGCAACG GCTTATCTAA TAGCTTTGGC ACAATTGCGA TGGCGCGAGA TCAAAATCCC
CATTCCGCAA CCAGTCAGTT TTACTTCAAC GTTGCTGAAA ACCAGAGGCT AGACCCATCA
TCGAGACGCT GGGGATACGC GGTATTTGGT GAGGTGATCG AAGGTGAGGA GGTACTCACT
GCCATGTCGA ATGTTGAGAC AGGACACAAT GCAAAACTTA AATGGCCTGA CTTTCCGATA
AAAGAGATCA TATTAGAAAA GGCAACGCTA CTACCCAGAG ACTAA
|
|---|
| Protein sequence | MIRLFNAFIL LCLSQSALAV DIQPNTLYPK VQLDTSMGKI VVELDRTRAP ITVDNFLTYV
VKGHYDKTLF HRVIAEFVVQ GGGLDLKQEE RPVDAPIINE SGNGLSNSFG TIAMARDQNP
HSATSQFYFN VAENQRLDPS SRRWGYAVFG EVIEGEEVLT AMSNVETGHN AKLKWPDFPI
KEIILEKATL LPRD
|
|---|
| |