Gene Swoo_3617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3617 
Symbol 
ID6117951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4411607 
End bp4413025 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content46% 
IMG OID641635170 
ProductNa(+)-translocating NADH-quinone reductase subunit A 
Protein accessionYP_001761976 
Protein GI170727950 
COG category[C] Energy production and conversion 
COG ID[COG1726] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA 
TIGRFAM ID[TIGR01936] NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00607859 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATGGG CTTGGTATTT TCCCTGTCAT TTATTACAGG AACGCGGCGC ATTATCTTTC 
CTTCATAACG TAGTGCTTGT GGATATGATT ACAATAAAGA AAGGATTGGA CCTGCCCTTA
GCTGGCGGGC CAGAGCAAGT CATACATAAT GGCCCAGCCA TTAAACGTGT AGCTACTTTG
GGTGAAGAGT ATATTGGCTT ACGTCCCACA ATGAAGATTA AAGTGGGTGA TAAAGTTAAA
AAAGGTCAGA TTATCTTCGA AGATAAGAAG AACCTTGGTG TTAAGTATAC GGCTTCAGCC
AGTGGTACAG TAGTTGAAAT TAACCGGGGA GCACAGCGTG TTCTCCAGTC AGTCGTCATT
GAAGCTGAAG GGAATGAGTG TGTCTCTTTT GCTAAATATG ATACTGCCCA GTTAGATACA
TTGGACGCGC AACTTGTTCG TGACAACCTG ATTGAATCAG GGTTATGGAC TGCCATGCGT
ACTCGTCCTT TCAGTAAAGC CCCTGCCGTA GATTCTACCG CAGCCGGTAT CTTCGTTACT
GCCATAGATA CTCAGCCTCT TGCTGCTAAC CCTGAAGTGG TTATCGGTGA GCATAAAGAT
GATTTTGCTA ACGGACTTAA GGTTCTTGCA AGATTGACTG AAGGTAAGGT TTATCTATGT
AAAGCGCCTG GTGCTGATAT TCCAGCAGCC AATGCACAAG TAGAAGAGTT TGCTGGTGGA
CATCCAGCAG GTCTGCCTGG CACTCACATT CACTTCCTAT TATCTGCATC TGCAAACAGA
ACTGTTTGGC ATGTGGGTTA TCAAGATGTG ATTGCCATAG GTCAACTCTT TACTACCGGT
GAGCTTAACT CTGAGCGTGT TGTTGCAGTG GTTGGCCCTA AAGCGTTAAA GCCAAGATTA
ATTCGTACTC AAGTTGGTGC TTCAACGGCT GAATTAACAG CTGGTGAAAT TGCTGATGGT
GAAGTGCGTG TGGTATCTGG TTCAGTGCTG AGTGGTCGTA CTGCCGTTGG GCCTCATGCT
TATCTTGGTC GTTTCCATCA GCAAGTGTCG CTTCTAGAAG AGGGCAGAGA GCAGGAGTTT
ATCGGTTGGG CTATGCCTGG CGCCGAAAAA TACTCTATTA CTCGCGCTTT CTTAGGTCAC
TTGTCACCTT CTCGTCTGTT TAAGATGACG ACAAGCACTG GTGGTTCAGA CAGAGCTATG
GTGCCTATTG GTAACTATGA GCGCGTTATG CCATTGGATA TTCTTCCAAC TATGTTGCTT
AGAGATCTCG TCTCTGGTGA TTTTGATGGT GCCGCTTCAT TAGGTGCACT TGAGTTGGAT
GAAGAAGATT TGGCGCTGTG TACTTTCGTA TGTCCTGGTA AGTATGACTA TGCTACTTAT
CTGCGTGACT GTTTAGATAC GATCGTGAGG GAAGGCTAA
 
Protein sequence
MRWAWYFPCH LLQERGALSF LHNVVLVDMI TIKKGLDLPL AGGPEQVIHN GPAIKRVATL 
GEEYIGLRPT MKIKVGDKVK KGQIIFEDKK NLGVKYTASA SGTVVEINRG AQRVLQSVVI
EAEGNECVSF AKYDTAQLDT LDAQLVRDNL IESGLWTAMR TRPFSKAPAV DSTAAGIFVT
AIDTQPLAAN PEVVIGEHKD DFANGLKVLA RLTEGKVYLC KAPGADIPAA NAQVEEFAGG
HPAGLPGTHI HFLLSASANR TVWHVGYQDV IAIGQLFTTG ELNSERVVAV VGPKALKPRL
IRTQVGASTA ELTAGEIADG EVRVVSGSVL SGRTAVGPHA YLGRFHQQVS LLEEGREQEF
IGWAMPGAEK YSITRAFLGH LSPSRLFKMT TSTGGSDRAM VPIGNYERVM PLDILPTMLL
RDLVSGDFDG AASLGALELD EEDLALCTFV CPGKYDYATY LRDCLDTIVR EG