Gene Swoo_3581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3581 
Symbol 
ID6117915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4372949 
End bp4373749 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content45% 
IMG OID641635134 
Productpeptidase M48 Ste24p 
Protein accessionYP_001761940 
Protein GI170727914 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000704965 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.319279 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTAC TACCAGTGTT ATTTCTTTCA ACTTTAGCCT TAACAGGCTG TGTCACTACG 
GAATCTCCTA CGGGACGAAA TCAGATTTTA CTTTTCTCCT CCCAAGAGAT AGATCAGATG
GGTGCAAGCT CATTTGATCA GATAAAAAAG CAGGAGAAGG TGAGTCAAGA TCCTAAACTT
AATGCTTATG TGGATTGTGT GGCAAACAGA ATAACAAGCG TACTGCCTAA ATCTAACCTT
CCATGGGATG TGGTAGTGTT TGAGTCAGAT CAGGTGAATG CTTTTGCACT ACCTGGTGGT
CATATCGGTG TCTATACCGG CCTATTAAAG GTCGCAGCAA ATGAAGACCA GTTGGCGACG
GTGATTGGAC ATGAAGTAGC CCATGTATTG GCTAATCATA GTAATGAGCA GGTTTCTCGC
GCCAAGTTGA CAGGTACGGG GATGCAACTG GCTGATGTTG CATTGGGTGC TGGTGGTGTG
AGTAATAAAG ATCTTTATAT GGCAGCTCTA GGTTTAGGGA CTCAAGTGGG CTTTATTCTT
CCCTATGGCC GCGAGCAGGA GAGTGAAGCT GATGTGATGG GCGTTGAGTT GATGGCAAGA
GCGGGGTTTG ATCCGAGCCA GAGCATGGTG CTGTGGCAAA ATATGGCAAA ACAAGGTGGT
GAACAGGGCC CAGAGTTACT TTCTACTCAC CCATCCCACG GTCATAGAAT CGATGAGTTG
ACTCAAATGC AGTCTCAAGT CATGCCTCTT TATCAGGCAA GTAAAGGTCA AGTACAAAAT
CGCTGTCAAA AGACGAAATA A
 
Protein sequence
MKLLPVLFLS TLALTGCVTT ESPTGRNQIL LFSSQEIDQM GASSFDQIKK QEKVSQDPKL 
NAYVDCVANR ITSVLPKSNL PWDVVVFESD QVNAFALPGG HIGVYTGLLK VAANEDQLAT
VIGHEVAHVL ANHSNEQVSR AKLTGTGMQL ADVALGAGGV SNKDLYMAAL GLGTQVGFIL
PYGREQESEA DVMGVELMAR AGFDPSQSMV LWQNMAKQGG EQGPELLSTH PSHGHRIDEL
TQMQSQVMPL YQASKGQVQN RCQKTK