| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3554 |
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| Symbol | prfC |
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| ID | 6117886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4337433 |
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| End bp | 4339013 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635105 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001761913 |
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| Protein GI | 170727887 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.93604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000001078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCAGGCA ATAAAGTTGA GGTCGACAAG CGTCGTACTT TCGCCATTAT CTCTCACCCC
GATGCGGGTA AGACCACCAT TACCGAGAAG GTACTTTTAT TTGGCAACGC GTTACAAAAA
GCGGGGACGG TAAAAGGTAA GAAATCTGGA CAACATGCGA AGTCAGATTG GATGGAGATG
GAGAAAGATC GTGGTATCTC TATTACGACC TCTGTAATGC AGTTTCCATA TAATGATGCC
TTAGTTAATC TACTTGATAC TCCAGGTCAC GAAGACTTCT CTGAAGATAC CTACCGTACA
TTAACAGCAG TGGACTCCTG CTTGATGGTT ATCGATTCAG CGAAAGGTGT AGAGCAACGT
ACCATTAAAT TAATGGAAGT GACTCGTCTA CGTGATACGC CTATCGTGAC ATTCATGAAT
AAGTTAGATC GTGATATTCG CGATCCTTTA GAGTTGATGG ATGAAGTTGA AGAGGTACTT
AACATTGCCT GTGCGCCTAT TACTTGGCCA ATCAGTTCAG GTAAAGAGTT TAAGGGTGTG
TATCATCTGC TGCGTGATGA GGTGATCCTC TATCAAAGTG GTCAAGGACA TACGATACAA
GACTCTAGAA TCATTAAAGG TCTCAATAAC CCAGAGCTTG ATGAAGCTAT TGGTGCTTAT
GCAGCCGAAG TGCGTGAAGA GCTTGAGCTT GTGCTTGGTG CATCGAATGA GTTTGATCTT
GAGATGTTCC TTGCCGGTGA GTTGACCCCT GTTTTCTTTG GTACTGCATT AGGCAACTTT
GGTGTTGATC ATATTCTAGA CGGTATCGTT GAGTGGGCGC CTAAACCACA AGCCCGTGAA
ACGGAAGTCA GAGACATTCA ACCTGAAGAT GAGAAGTTCA GTGGCTTCGT GTTTAAGATC
CAGGCGAATA TGGATCCGAA ACACAGAGAC AGAGTTGCAT TTATGCGGAT CTGTTCTGGT
CGTTATGAGC AGGGCATGAA GATGCACCAC GTACGTCTTG GTAAAGATGT TAACGTCAGT
GATGCTCTAA CCTTTATGGC GGGCGATCGT AATCGTGCTG AAGTGGCTTA CCCTGGTGAT
ATTATCGGAT TACATAACCA CGGTACGATG CGAATTGGTG ACACGTTTAC CCAAGGGGAG
AAGTTCCGCT TTACCGGTAT TCCCAATTTC GCACCTGAGA TGTTTAGACG TATCCGTTTA
AAAGATCCAC TAAAGCAGAA GCAGTTGCTC AAAGGGTTAG TACAACTCTC AGAAGAGGGA
GCTGTGCAGG TATTTAGACC TATTGACTCT AATGATCTGA TTGTGGGTGC TGTTGGTGTT
CTTCAGTTTG AAGTGGTCGT TGGCCGCTTG AAGAGTGAAT ACAAGGTTGA AGCCATCTAT
GAAGGGATCA GCGTTGCCAC AGCTCGCTGG GTCTACTGTG ATGATGAGCG TAAGCTTGAA
GAGTTCCGTC GTAAGTGCAG TAACAACCTT GCGCTGGATG GTGGTGATAA TCTGACTTAT
ATCGCACCAA CTATGGTAAA CCTCAATCTT TCGATGGAGC GCTACCCAGA TATTCAGTTT
GCTAAGACCC GTGAGAACTA A
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| Protein sequence | MSGNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYNDA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEQR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPL ELMDEVEEVL NIACAPITWP ISSGKEFKGV
YHLLRDEVIL YQSGQGHTIQ DSRIIKGLNN PELDEAIGAY AAEVREELEL VLGASNEFDL
EMFLAGELTP VFFGTALGNF GVDHILDGIV EWAPKPQARE TEVRDIQPED EKFSGFVFKI
QANMDPKHRD RVAFMRICSG RYEQGMKMHH VRLGKDVNVS DALTFMAGDR NRAEVAYPGD
IIGLHNHGTM RIGDTFTQGE KFRFTGIPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG
AVQVFRPIDS NDLIVGAVGV LQFEVVVGRL KSEYKVEAIY EGISVATARW VYCDDERKLE
EFRRKCSNNL ALDGGDNLTY IAPTMVNLNL SMERYPDIQF AKTREN
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