| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3550 |
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| Symbol | |
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| ID | 6117882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4333510 |
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| End bp | 4334343 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641635101 |
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| Product | nucleoside-specific channel-forming protein Tsx |
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| Protein accession | YP_001761909 |
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| Protein GI | 170727883 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000115802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000668539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAAAACG TTAAAACTAT AGCACTAGCT ACTGCACTAA CAGCAACTAT GGCTGCACCA
GCTTTCGCAG CTGATCGTAG CGACCTACGT GGCGGCGATT ATGGCTGGAT GCAGTTCAAT
GCAATGTATG CAGTAAATGA ACTTCCACGT GATGGCTCTA CCGATAATGG CCATGACTAC
CTAGAGATGG AATTTGGCGG CCGCGCTGGC ATCGTTGATC TATACGGTTA TGTTGATGTG
TTCAACCTAA CTAACCGTGA CTACGGTGAT AAAGGTGCTG GTAAAGGTAG CAGCAAAATC
TTCATGAAGT TTGCACCACG TTTCTCTATC GATGCAATGA CTGGTTGGGA TCTTTCTGTT
GGTCCTATCC AAGAAGTTTA CTTCTCAACT CTATTTAACT GGGATGACCG TGTTGGCGAA
GGCGTAAACT CTACATTCTG GGGTCTAGGT GCTGATGTTA TGGTTCCATG GTTAGGTAAA
ACTGGCATGA ACCTATACGG TTACTACGAC CTAAACAACA AAGAGTGGAA CGGTTACCAA
TTCTCTATGA ACTGGTTCAA GCCAGTTGTT AACTTTGATA ACGGTACTTT CATCGCTTTC
CAAGGTTATG TTGATTACCA GTTCGGTGCT GATGCAGTTG ATGATGAGTT TGTTCCTACA
ACTTCTAGCG GTGGTGCTGC ATACTTCGGT CTACACTGGC ACTCAGACAA CTATGCTCTA
GGTTACGGTC TAAAGGGTTA CAACGATGTA TACCTGCTTA AAGATGACGG CGGTATCGTA
GGTCTAGAAA CTACTGGTTT CGCACATTAC TTCACAGCAA CTTACAAGTT CTAA
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| Protein sequence | MKNVKTIALA TALTATMAAP AFAADRSDLR GGDYGWMQFN AMYAVNELPR DGSTDNGHDY
LEMEFGGRAG IVDLYGYVDV FNLTNRDYGD KGAGKGSSKI FMKFAPRFSI DAMTGWDLSV
GPIQEVYFST LFNWDDRVGE GVNSTFWGLG ADVMVPWLGK TGMNLYGYYD LNNKEWNGYQ
FSMNWFKPVV NFDNGTFIAF QGYVDYQFGA DAVDDEFVPT TSSGGAAYFG LHWHSDNYAL
GYGLKGYNDV YLLKDDGGIV GLETTGFAHY FTATYKF
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